write.html: Write a data.frame to an html file.

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

Creates an html file with links and plots from a table.

Usage

write.html(x, links, tiny.pic, tiny.pic.size = 100, title = "", file, digits = 3)

Arguments

x	Object of class data.frame.
links	Object of class list with one item per column in x. If we want the ith column of x to have links to a site or local file we will have to write those links into the ith element of links.
tiny.pic	Object of class list with one item per column in x. If we want the ith column of x to show plots instead of text we will have to write the path to the plots into the ith element of links.
tiny.pic.size	size of the pictures if any.
title	Title that will be shown on top of the html file.
file	path and name of the file that will be created.
digits	number of digits that will be shown in numeric columns of x.

Author(s)

Evarist Planet

See Also

write.csv, write.table, htmlpage

Examples

##
##Code has been commented to avoid the creation of files
##
#(x <- data.frame(gene.symbol=c('AARS','ABCF1','ABLIM1'),value=c(2.054,30.024,5.0221),plot=rep('Open',3)))
#tiny.pic <- links <- vector('list',length=ncol(x))
#links[[1]] <- paste('http://www.genecards.org/index.php?path=/Search/keyword/',x[,1])
#for (i in 1:nrow(x)) {
#  png(paste('~/Desktop/',x[i,1],'.png',sep=''))
#  plot(1:3,log(1:3))
#  dev.off()
#}
#tiny.pic[[3]] <- links[[3]] <- paste(x[,1],'.png',sep='')
#write.html(x,links=links,tiny.pic=tiny.pic,file='~/Desktop/x.html',title='My html test')

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.