Files in phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

DESCRIPTION
ChangeLog
NAMESPACE
man/getVars2test-methods.Rd man/pAdjust.Rd man/gseaSignaturesSign-class.Rd man/gseaSignificanceSign-class.Rd man/show-methods.Rd man/gseaSignatures-class.Rd man/export2CSV.Rd man/getEsPositions.Rd man/pca.Rd man/epheno-class.Rd man/epheno2html.Rd man/getKegg.Rd man/getGo.Rd man/phenoTest-package.Rd man/summary.gsea.Rd man/barplotSignifSignatures-methods.Rd man/gseaSignificance.Rd man/gseaSignatures-methods.Rd man/ephenoGetters.Rd man/barplotSignatures-methods.Rd man/plots4epheno.Rd man/write.html.Rd man/findCopyNumber.Rd man/smoothCoxph.Rd man/summary.gseaSignificance.Rd man/plot.gsea.Rd man/pAdjust-methods.Rd man/plot.gseaSignatures.Rd man/gseaSignificanceVar-class.Rd man/gsea.Rd man/export2CSV-methods.Rd man/ClusterPhenoTest.Rd man/gseaData-class.Rd man/gsea.kegg.go.Rd man/epheno.Rd man/heatmapPhenoTest.Rd man/ExpressionPhenoTest.Rd man/gsea.subset.Rd man/getVars2test.Rd man/gsea2html.Rd man/eset2genelevel.Rd man/eset.Rd man/eset.genelevel.Rd man/gseaSignaturesVar-class.Rd man/gseaSignatures.Rd man/heatmapPhenoTest-methods.Rd man/genesInArea.Rd man/getGseaSignatures.Rd
vignettes/phenoTest.Rnw
vignettes/references.bib
inst/javascript/dragtable.js
inst/javascript/sorttable.js
inst/doc/phenoTest.Rnw
inst/doc/phenoTest.pdf inst/doc/phenoTest.R
data/epheno.RData
data/eset.RData
data/eset.genelevel.RData
build/vignette.rds
R/eset2genelevel.R R/smoothCoxph.R R/epheno_plots.R R/write.html.R R/getGeneSet.R R/gsea2html.R R/pca.R R/heatmapPhenoTest.R R/findCopyNumber.R R/epheno.R R/gsea.R R/epheno2html.R R/ClassDefinitions.R
phenoTest documentation built on Nov. 17, 2017, 1:49 p.m.