plot.gsea: GSEA-like Plot.

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

Builds a GSEA plot using a gseaData object. gseaData object can be obtained with the gsea function.

Usage

plot.gseaData(x,selGsets,selVars,...)

Arguments

x	this has to be of class gseaData
selGsets	object of class character containing the names of the gene sets that we want to plot.
selVars	object of class character containing the names of the variables that we want to plot.
...	Arguments to be passed to plot.

Author(s)

Evarist Planet

References

Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis. www.pnas.org/cgi/doi/10.1073/pnas.0506580102

Examples

#for examples see the help file of gseaSigntaures: ?gseaSignatures

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.