summary.gseaSignificance: Obtain a data.frame with the pvalues and fdr for all...
In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
Description
Usage
Arguments
Author(s)
References
Examples
Description
Builds a data.frame object that can easily be written to a csv file
containing the ES, NES, pval.ES, pval.NES and FDR.
Usage
1
summary.gseaSignificanceSign(object,...)
Arguments
object
object of class gseaSignificanceSign or gseaSignificanceVar.
...
Arguments to be passed to summary.
Author(s)
Evarist Planet
References
Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis.
www.pnas.org/cgi/doi/10.1073/pnas.0506580102
Examples
1
#for examples see the help file of gseaSigntaures: ?gseaSignatures
phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.
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Description Usage Arguments Author(s) References Examples
Description
Builds a data.frame object that can easily be written to a csv file containing the ES, NES, pval.ES, pval.NES and FDR.
Usage
1 | summary.gseaSignificanceSign(object,...)
|
Arguments
object |
object of class |
... |
Arguments to be passed to |
Author(s)
Evarist Planet
References
Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis. www.pnas.org/cgi/doi/10.1073/pnas.0506580102
Examples
1 | #for examples see the help file of gseaSigntaures: ?gseaSignatures
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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