gseaSignatures-methods: Methods for Function gseaSignatures in Package 'phenoTest'

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

Methods for function gseaSignatures in Package ‘phenoTest’. For more information read the function's manual.

Methods

signature(x = "ANY", signatures = "character")

Method for signature of class character.

signature(x = "ANY", signatures = "GeneSet")

Method for signature of class character.

signature(x = "epheno", signatures = "list")

Method for an epheno object and several signatures stored in an object of class list.

signature(x = "matrix", signatures = "GeneSetCollection")

Method for an matrix object and several signatures stored in an object of class GeneSetCollection.

signature(x = "epheno", signatures = "GeneSetCollection")

Method for an epheno object and several signatures stored in an object of class GeneSetCollection.

signature(x = "numeric", signatures = "GeneSetCollection")

Method for an numeric object and several signatures stored in an object of class GeneSetCollection.

signature(x = "matrix", signatures = "list")

Method for an matrix object and several signatures stored in an object of class list.

signature(x = "numeric", signatures = "list")

Method for an numeric object and several signatures stored in an object of class list.

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.