DAISIE_plot_area: Plots island area function through time

In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Plots island area function through time

Description

Plots island area function through time

Usage

DAISIE_plot_area(
  total_time,
  area_pars,
  peak,
  island_ontogeny = "beta",
  resolution,
  sea_level = "const"
)

Arguments

total_time	Numeric defining the length of the simulation in time units.
area_pars	A named list containing area and sea level parameters as created by create_area_pars(): [1]: maximum area [2]: current area [3]: value from 0 to 1 indicating where in the island's history the peak area is achieved [4]: total island age [5]: amplitude of area fluctuation from sea level [6]: frequency of sine wave of area change from sea level [7]: angle of the slope of the island
peak	A numeric value specifying the peakiness (or shaprness) of the ontogeny curve. Higher values imply peakier ontogeny. This value is internally calculated by calc_peak() given the area at the present and the area_pars.
island_ontogeny	In DAISIE_sim_time_dep(), DAISIE_ML_CS and plotting a string describing the type of island ontogeny. Can be "const", "beta" for a beta function describing area through time. In all other functions a numeric describing the type of island ontogeny. Can be 0 for constant, 1 for a beta function describing area through time. In ML functions island_ontogeny = NA assumes constant ontogeny. Time dependent estimation is not yet available as development is still ongoing. Will return an error if called in that case.
resolution	numeric indicating resolution of plot. Should be < 0.
sea_level	In DAISIE_sim_time_dep() and plotting a string describing the type of sea level. Can be "const" or "sine" for a sine function describing area through time. In all other functions a numeric describing the type of sea level. Can be 0 for constant, 1 for a sine function describing area through time.

Value

a plot with the area size through time

See Also

Other rate calculations: get_ana_rate(), get_ext_rate(), get_immig_rate(), island_area_vector(), island_area(), update_max_rates(), update_rates()

DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.