DAISIE_sim_update_state_trait_dep: Updates state of island given sampled event with two trait...

In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Updates state of island given sampled event with two trait states.

Description

Makes the event happen by updating island species matrix and species IDs. What event happens is determined by the sampling in the algorithm.

Usage

DAISIE_sim_update_state_trait_dep(
  timeval,
  total_time,
  possible_event,
  maxspecID,
  mainland_spec,
  island_spec,
  stt_table,
  trait_pars
)

Arguments

timeval	Numeric defining current time of simulation.
total_time	Numeric defining the length of the simulation in time units.
possible_event	Numeric defining what event will happen.
maxspecID	Current species IDs.
mainland_spec	Number of mainland species.
island_spec	Matrix with current state of simulation containing number of species.
stt_table	Matrix with number of species at each time step.
trait_pars	A named list containing diversification rates considering two trait states created by create_trait_pars: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A numeric with the number of species with trait state 2 on mainland

Value

The updated state of the system, which is a list with the island_spec matrix, an integer maxspecID with the most recent ID of species and the stt_table, a matrix with the current species through time table.

See Also

DAISIE_sim_core_trait_dep

DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.