Galapagos_datalist_2types: Colonization and branching times of 8 terrestrial avifaunal...
In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Galapagos_datalist_2types R Documentation
Colonization and branching times of 8 terrestrial avifaunal clades in list
format, accepted by DAISIE_ML and DAISIE_loglik_all
Description
A list containing the colonization and branching times of the terrestrial
avifauna in the Galapagos. This list can be generated using the
DAISIE_dataprep function, which converts a user-specified data table into a
data object, but the object can of course also be entered directly. It is an
R list object with the following elements.
The first element of the
list has three components:
$island_age - the island age
$not_present_type1 - the number of mainland lineages of type 1 that
are not present on the island
$not_present_type2 - the number of
mainland lineages of type 2 that are not present on the island
The
following 8 elements of the list each contains information on a single
colonist lineage on the island and has 5 components:
$colonist_name - the name of the species or clade that colonized the
island
$branching_times - island age followed by stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge species and Endemic species with no close relatives
on the island. For endemic clades with more than one species on the island
(cladogenetic clades/ radiations) these should be island age followed by the
branching times of the island cladeincluding the stem age of the clade.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset only the finches are type 2
Format
A list with 9 elements the first of which contains 3 elements and
the following 8 containing 5 components.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium
and non-equilibrium dynamics simultaneously operate in the Galapagos
islands. Ecology Letters 18: 844-852.
See Also
DAISIE_dataprep, DAISIE_ML
DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.
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| Galapagos_datalist_2types | R Documentation |
Colonization and branching times of 8 terrestrial avifaunal clades in list format, accepted by DAISIE_ML and DAISIE_loglik_all
Description
A list containing the colonization and branching times of the terrestrial
avifauna in the Galapagos. This list can be generated using the
DAISIE_dataprep function, which converts a user-specified data table into a
data object, but the object can of course also be entered directly. It is an
R list object with the following elements.
The first element of the
list has three components:
$island_age - the island age
$not_present_type1 - the number of mainland lineages of type 1 that
are not present on the island
$not_present_type2 - the number of
mainland lineages of type 2 that are not present on the island
The
following 8 elements of the list each contains information on a single
colonist lineage on the island and has 5 components:
$colonist_name - the name of the species or clade that colonized the
island
$branching_times - island age followed by stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge species and Endemic species with no close relatives
on the island. For endemic clades with more than one species on the island
(cladogenetic clades/ radiations) these should be island age followed by the
branching times of the island cladeincluding the stem age of the clade.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset only the finches are type 2
Format
A list with 9 elements the first of which contains 3 elements and the following 8 containing 5 components.
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.
See Also
DAISIE_dataprep, DAISIE_ML
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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