frogs_datalist: Colonization and branching times of 5 Eleutherodactylus...
In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
frogs_datalist R Documentation
Colonization and branching times of 5 Eleutherodactylus clades from Hispaniola island.
Description
A list containing the colonization and branching times of the Eleutherodactylus frogs of
Hispaniola. Main dataset used in Etienne et al. This list can be generated
using the DAISIE_dataprep function, which converts a user-specified data table into a data object,
but the
object can of course also be entered directly. It is an R list object with
the following elements.
The first element of the list has two
components:
$island_age - the island age
$not_present - the number of mainland lineages that are not present
on the island
The following elements of the list each contains
information on a single colonist lineage on the island and has 5
components:
$colonist_name - the name of the species or clade
that colonized the island
$branching_times - island age followed by stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge species and Endemic species with no close
relatives on the island. For endemic clades with more than one species on the island
(cladogenetic clades/ radiations) these should be island age followed by the
branching times of the island clade including the stem age of the clade.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
* Endemic_MaxAge: 5 or 6
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset all are equal to 1.
Format
A list with 6 elements, the first of which contains 2 elements and
the following 5 elements containing 5 components.
Source
Etienne RS, Haegeman B, Dugo-Cota A, Vila C, Gonzalez-Voyer A & Valente L. The
limits to ecological limits to diversification.
See Also
DAISIE_dataprep, DAISIE_ML, DAISIE_SR_ML
DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.
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| frogs_datalist | R Documentation |
Colonization and branching times of 5 Eleutherodactylus clades from Hispaniola island.
Description
A list containing the colonization and branching times of the Eleutherodactylus frogs of
Hispaniola. Main dataset used in Etienne et al. This list can be generated
using the DAISIE_dataprep function, which converts a user-specified data table into a data object,
but the
object can of course also be entered directly. It is an R list object with
the following elements.
The first element of the list has two
components:
$island_age - the island age
$not_present - the number of mainland lineages that are not present
on the island
The following elements of the list each contains
information on a single colonist lineage on the island and has 5
components:
$colonist_name - the name of the species or clade
that colonized the island
$branching_times - island age followed by stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge species and Endemic species with no close
relatives on the island. For endemic clades with more than one species on the island
(cladogenetic clades/ radiations) these should be island age followed by the
branching times of the island clade including the stem age of the clade.
$stac - the status of the colonist
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
* Endemic_MaxAge: 5 or 6
$missing_species - number of island species
that were not sampled for particular clade (only applicable for endemic
clades)
$type1or2 - whether the colonist belongs to type 1 or
type 2. In this dataset all are equal to 1.
Format
A list with 6 elements, the first of which contains 2 elements and the following 5 elements containing 5 components.
Source
Etienne RS, Haegeman B, Dugo-Cota A, Vila C, Gonzalez-Voyer A & Valente L. The
limits to ecological limits to diversification.
See Also
DAISIE_dataprep, DAISIE_ML, DAISIE_SR_ML
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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