get_ana_rate: Calculate anagenesis rate

In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Calculate anagenesis rate

Description

Internal function. Calculates the anagenesis rate given the current number of immigrant species and the per capita rate.

Usage

get_ana_rate(laa, num_immigrants, island_spec = NULL, trait_pars = NULL)

Arguments

laa	A numeric with the per capita anagenesis rate.
num_immigrants	A numeric with the current number of non-endemic species (a.k.a non-endemic species).
island_spec	Matrix with current state of simulation containing number of species.
trait_pars	A named list containing diversification rates considering two trait states created by create_trait_pars: [1]:A numeric with the per capita transition rate with state 1 [2]:A numeric with the per capita immigration rate with state 2 [3]:A numeric with the per capita extinction rate with state 2 [4]:A numeric with the per capita anagenesis rate with state 2 [5]:A numeric with the per capita cladogenesis rate with state 2 [6]:A numeric with the per capita transition rate with state 2 [7]:A numeric with the number of species with trait state 2 on mainland

Author(s)

Pedro Neves, Joshua Lambert, Shu Xie

See Also

Other rate calculations: DAISIE_plot_area(), get_ext_rate(), get_immig_rate(), island_area(), island_area_vector(), update_max_rates(), update_rates()

DAISIE documentation built on June 8, 2025, 11:28 a.m.