islands_10reps_RAW: 1000 islands in RAW format simulated with the ML parameters...

In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

1000 islands in RAW format simulated with the ML parameters of the CR model for the Galapagos data.

Description

Each simulated dataset is an element of the list, which can be called using e.g. islands_10reps_RAW[[1]] Each of the island replicates is a list in itself. The first (e.g. islands_10reps_RAW[[x]][[1]]) element of that list has the following components:
The following elements of the RAW list each contain information on a single colonist lineage on the island and has 5 components:
$branching_times - island age and stem age of the population/species in the case of Non-endemic, Non-endemic_MaxAge and Endemic anagenetic species. For cladogenetic species these should be island age and branching times of the radiation including the stem age of the radiation.
$stac - the status of the colonist
* Not_present: 0
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
$stt_table - Species-through-time table for the descendants of the mainland species (nI - number of non-endemic species; nA - number of anagenetic species, nC - number of cladogenetic species)
$missing_species - number of island species that were not sampled for particular clade (only applicable for endemic clades)

Format

A list with 10 items.

Source

Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.

See Also

DAISIE_sim_cr(), DAISIE_plot_sims

DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.