Nothing
test_that('DESeq2_l2fc runs with default params',{
df_l2fc = DESeq2_l2fc(physeq_S2D2_l[[1]],
sparsity_threshold=0.25,
density_min=1.71,
density_max=1.75,
design=~Substrate)
expect_is(df_l2fc, 'data.frame')
expect_gt(nrow(df_l2fc), 0)
expect_equal(unique(df_l2fc$density_min)[1], 1.71)
expect_equal(unique(df_l2fc$density_max)[1], 1.75)
})
test_that('DESeq2_l2fc runs with sparsity_apply=heavy',{
df_l2fc = DESeq2_l2fc(physeq_S2D2_l[[1]],
sparsity_threshold=0.25,
density_min=1.71,
density_max=1.75,
design=~Substrate,
sparsity_apply='heavy')
expect_is(df_l2fc, 'data.frame')
expect_gt(nrow(df_l2fc), 0)
expect_equal(unique(df_l2fc$density_min)[1], 1.71)
expect_equal(unique(df_l2fc$density_max)[1], 1.75)
})
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