GenerateVCFsFromIndelSimpleFiles: Generate reconstructed VCFs from indel (small insertions and...

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Generate reconstructed VCFs from indel (small insertions and deletions) simple files

Description

Generate reconstructed VCFs from indel (small insertions and deletions) simple files

Usage

GenerateVCFsFromIndelSimpleFiles(
  files,
  output.dir,
  num.parallel.files = 1,
  mc.cores.per.file = 1
)

Arguments

files	Character vector of file paths to the indel simple files.
output.dir	The directory where the reconstructed VCFs will be saved.
num.parallel.files	The (maximum) number of files to run in parallel. On Microsoft Windows machines it is silently changed to 1. Each file in turn can require multiple cores, as governed by mc.cores.per.file.
mc.cores.per.file	The maximum number of cores to use for each file. On Microsoft Windows machines it is silently changed to 1.

ICAMS documentation built on June 15, 2025, 1:08 a.m.