GetGenomeKmerCounts: Generate k-mer abundance from a given genome
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
GetGenomeKmerCounts R Documentation
Generate k-mer abundance from a given genome
Description
Generate k-mer abundance from a given genome
Usage
GetGenomeKmerCounts(k, ref.genome, filter.path, verbose = FALSE)
Arguments
k
Length of k-mers (k>=2)
ref.genome
A ref.genome argument as described in
ICAMS.
filter.path
If given, homopolymers will be masked from
genome(sequence). Only simple repeat masking is accepted now.
verbose
If TRUE, generate progress messages.
Value
Matrix of the counts of each k-mer across the ref.genome
ICAMS documentation built on June 22, 2024, 6:47 p.m.
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| GetGenomeKmerCounts | R Documentation |
Generate k-mer abundance from a given genome
Description
Generate k-mer abundance from a given genome
Usage
GetGenomeKmerCounts(k, ref.genome, filter.path, verbose = FALSE)
Arguments
k |
Length of k-mers (k>=2) |
ref.genome |
A |
filter.path |
If given, homopolymers will be masked from genome(sequence). Only simple repeat masking is accepted now. |
verbose |
If |
Value
Matrix of the counts of each k-mer across the ref.genome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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