MakeVCFDBSdf: MakeVCFDBSdf Take DBS ranges and the original VCF and...
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
MakeVCFDBSdf R Documentation
MakeVCFDBSdf Take DBS ranges and the original VCF and generate a VCF with
dinucleotide REF and ALT alleles.
Description
MakeVCFDBSdf Take DBS ranges and the original VCF and generate a VCF with
dinucleotide REF and ALT alleles.
Usage
MakeVCFDBSdf(DBS.range.df, SBS.vcf.dt)
Arguments
DBS.range.df
Data frame with columns CHROM, LOW, HIGH
SBS.vcf.dt
A data table containing the VCF from which
DBS.range.df was computed.
Value
A minimal VCF with only the columns CHROM, POS,
ID, REF, ALT, VAF, read.depth.
ICAMS documentation built on June 15, 2025, 1:08 a.m.
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| MakeVCFDBSdf | R Documentation |
MakeVCFDBSdf Take DBS ranges and the original VCF and generate a VCF with dinucleotide REF and ALT alleles.
Description
MakeVCFDBSdf Take DBS ranges and the original VCF and generate a VCF with dinucleotide REF and ALT alleles.
Usage
MakeVCFDBSdf(DBS.range.df, SBS.vcf.dt)
Arguments
DBS.range.df |
Data frame with columns CHROM, LOW, HIGH |
SBS.vcf.dt |
A data table containing the VCF from which
|
Value
A minimal VCF with only the columns CHROM, POS,
ID, REF, ALT, VAF, read.depth.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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