ReadDukeNUSCat192: Read a 192-channel spectra (or signature) catalog in Duke-NUS...
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
Description
Usage
Details
Value
View source: R/other_catalog_formats.R
Description
WARNING: will not work with region = "genome". For this
you must first read with region = "unknown", then
convert the cat96 return to "genome" and
ignore the cat192 return, which is nonsensical.
Usage
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ReadDukeNUSCat192(
file,
ref.genome = NULL,
region = "unknown",
catalog.type = "counts",
abundance = NULL
)
Details
The file needs to have the column names Before Ref After Var
in the first 4 columns
Value
A list with two elements
ICAMS documentation built on April 3, 2021, 5:07 p.m.
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Description Usage Details Value
View source: R/other_catalog_formats.R
Description
WARNING: will not work with region = "genome". For this
you must first read with region = "unknown", then
convert the cat96 return to "genome" and
ignore the cat192 return, which is nonsensical.
Usage
1 2 3 4 5 6 7 | ReadDukeNUSCat192(
file,
ref.genome = NULL,
region = "unknown",
catalog.type = "counts",
abundance = NULL
)
|
Details
The file needs to have the column names Before Ref After Var in the first 4 columns
Value
A list with two elements
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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