ReadStrelkaSBSVCF: Read in the data lines of an SBS VCF created by Strelka...
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
View source: R/VCF_to_catalog_functions.R
ReadStrelkaSBSVCF R Documentation
Read in the data lines of an SBS VCF created by Strelka version 1
Description
Read in the data lines of an SBS VCF created by Strelka version 1
Usage
ReadStrelkaSBSVCF(file, name.of.VCF = NULL)
Arguments
file
The name/path of the VCF file, or a complete URL.
name.of.VCF
Name of the VCF file. If NULL(default), this
function will remove all of the path up to and including the last path
separator (if any) in file and file path without extensions (and the
leading dot) will be used as the name of the VCF file.
Value
A data frame storing data lines of a VCF file with two
additional columns added which contain the VAF(variant allele frequency)
and read depth information.
ICAMS documentation built on June 22, 2024, 6:47 p.m.
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View source: R/VCF_to_catalog_functions.R
| ReadStrelkaSBSVCF | R Documentation |
Read in the data lines of an SBS VCF created by Strelka version 1
Description
Read in the data lines of an SBS VCF created by Strelka version 1
Usage
ReadStrelkaSBSVCF(file, name.of.VCF = NULL)
Arguments
file |
The name/path of the VCF file, or a complete URL. |
name.of.VCF |
Name of the VCF file. If |
Value
A data frame storing data lines of a VCF file with two additional columns added which contain the VAF(variant allele frequency) and read depth information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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