ReadStrelkaSBSVCFs: Read Strelka SBS (single base substitutions) VCF files.

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Read Strelka SBS (single base substitutions) VCF files.

Description

Read Strelka SBS (single base substitutions) VCF files.

Usage

ReadStrelkaSBSVCFs(files, names.of.VCFs = NULL)

Arguments

files	Character vector of file paths to the VCF files.
names.of.VCFs	Character vector of names of the VCF files. The order of names in names.of.VCFs should match the order of VCF file paths in files. If NULL(default), this function will remove all of the path up to and including the last path separator (if any) in files and file paths without extensions (and the leading dot) will be used as the names of the VCF files.

Value

A list of data frames which store data lines of VCF files with two additional columns added which contain the VAF(variant allele frequency) and read depth information.

ICAMS documentation built on June 22, 2024, 6:47 p.m.