WriteCatalog: Write a catalog

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Description

Write a catalog to a file.

Usage

WriteCatalog(catalog, file, strict = TRUE)

Arguments

catalog	A catalog as defined in ICAMS; see also as.catalog.
file	The path to the file to be created.
strict	If TRUE, do additional checks on the input, and stop if the checks fail.

Details

See also ReadCatalog.

Note

In ID (small insertion and deletion) catalogs, deletion repeat sizes range from 0 to 5+, but for plotting and end-user documentation deletion repeat sizes range from 1 to 6+.

Examples

file <- system.file("extdata",
                    "strelka.regress.cat.sbs.96.csv",
                    package = "ICAMS")
catSBS96 <- ReadCatalog(file)
WriteCatalog(catSBS96, file = file.path(tempdir(), "catSBS96.csv"))

ICAMS documentation built on April 3, 2021, 5:07 p.m.