WriteCatalogIndelSigPro: Write Indel Catalogs in SigProExtractor format

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Write Indel Catalogs in SigProExtractor format

Description

Write Indel Catalogs in SigProExtractor format to a file.

Usage

WriteCatalogIndelSigPro(catalog, file, strict = TRUE, sep = "\t")

Arguments

catalog	A catalog as defined in ICAMS; see also as.catalog.
file	The path to the file to be created.
strict	If TRUE, do additional checks on the input, and stop if the checks fail.
sep	Separator to use in the output file. In older version SigProfiler read comma-separated files; as of May 2020 it reads tab-separated files.

Note

In ID (small insertion and deletion) catalogs in SigProExtractor format, deletion repeat sizes range from 0 to 5, rather than 0 to 5+.

ICAMS documentation built on June 22, 2024, 6:47 p.m.