revc: Reverse complement every string in 'string.vec'

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Reverse complement every string in string.vec

Description

Based on reverseComplement. Handles IUPAC ambiguity codes but not "u" (uracil).
(see <https://en.wikipedia.org/wiki/Nucleic_acid_notation>).

Usage

revc(string.vec)

Arguments

string.vec

A character vector.

Value

A character vector with the reverse complement of every string in string.vec.

Examples

revc("aTgc") # GCAT

# A vector and strings with ambiguity codes
revc(c("ATGC", "aTGc", "wnTCb")) # GCAT GCAT VGANW

## Not run: 
revc("ACGU") # An error
## End(Not run)

ICAMS documentation built on June 22, 2024, 6:47 p.m.