View source: R/Patch-Simulation.R
Pupa first undergo one extra day of survival, calculated as a binomial over
\overline{P_{[t-1]}} * (1-μ_{ad})
.
This is an artifact of the conversion from continuous to discrete time (as mentioned
in the original Hancock paper this model is derived from).
Then, pupation is sampled from a binomial, where (1-\overline{φ}) is
the genotype-specific probability of becoming male, and \overline{φ}
is the genotype-specific of becoming female.
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