vis_ccle_tpm: Visualize CCLE Gene Expression
In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data
View source: R/vis_ccle_value.R
vis_ccle_tpm R Documentation
Visualize CCLE Gene Expression
Description
Visualize CCLE Gene Expression
Usage
vis_ccle_tpm(
Gene = "TP53",
data_type = "mRNA",
use_log = FALSE,
opt_pancan = .opt_pancan
)
Arguments
Gene
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").
data_type
support genomic profile for CCLE, currently "mRNA", "protein","cnv" are supported
use_log
if TRUE, log values.
opt_pancan
specify one dataset for some molercular profiles
Value
a ggplot object
UCSCXenaShiny documentation built on May 29, 2024, 1:10 a.m.
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View source: R/vis_ccle_value.R
| vis_ccle_tpm | R Documentation |
Visualize CCLE Gene Expression
Description
Visualize CCLE Gene Expression
Usage
vis_ccle_tpm(
Gene = "TP53",
data_type = "mRNA",
use_log = FALSE,
opt_pancan = .opt_pancan
)
Arguments
Gene |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
data_type |
support genomic profile for CCLE, currently "mRNA", "protein","cnv" are supported |
use_log |
if |
opt_pancan |
specify one dataset for some molercular profiles |
Value
a ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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