API for UCSCXenaShiny
Interactive Analysis of UCSC Xena Data

Global functions
%>% Man page
TCGA.organ Man page
UCSCXenaShiny Man page
Zscore Source code
`%:::%` Source code
analyze_gene_drug_response_asso Man page Source code
analyze_gene_drug_response_diff Man page Source code
app_run Man page Source code
available_hosts Man page Source code
ccle_absolute Man page
ccle_info Man page
check_exist_data Source code
check_file Source code
create_quantile_segment_frame Source code
ezcor Man page Source code
ezcor_batch Man page Source code
ezcor_caller Source code
ezcor_partial_cor Man page Source code
geom_split_violin Source code
get_cache_dir Source code
get_ccle_cn_value Man page Source code
get_ccle_gene_value Man page Source code
get_ccle_mutation_status Man page Source code
get_ccle_protein_value Man page Source code
get_data Source code
get_pancan_cn_value Man page Source code
get_pancan_gene_value Man page Source code
get_pancan_methylation_value Man page Source code
get_pancan_miRNA_value Man page Source code
get_pancan_mutation_status Man page Source code
get_pancan_protein_value Man page Source code
get_pancan_transcript_value Man page Source code
get_pancan_value Man page Source code
get_pcawg_APOBEC_mutagenesis_value Man page Source code
get_pcawg_fusion_value Man page Source code
get_pcawg_gene_value Man page Source code
get_pcawg_miRNA_value Man page Source code
get_pcawg_promoter_value Man page Source code
get_run_mode Source code
get_zenodo_dir Source code
gm_mean Source code
keep_cat_cols Man page Source code
load_data Man page Source code
parse_pacwg_args Source code
pcawg_info Man page
pcawg_purity Man page
pcor.mat Source code
pcor.rec Source code
pcor_test Source code
query_molecule_value Man page Source code
query_pancan_value Man page Source code
query_pcawg_pancan_value Source code
query_toil_value_df Man page Source code Source code
query_value Source code
report_dataset_info Source code
rm_cache_dir Source code
save_data Source code
sur_plot Source code
tcga survival analysis Man page
tcga_clinical Man page
tcga_genome_instability Man page
tcga_gtex Man page
tcga_purity Man page
tcga_subtypes Man page
tcga_surv Man page
tcga_surv_get Man page Source code
tcga_surv_plot Man page Source code
tcga_tmb Man page
toil_info Man page
try_query_value Source code
vis_ccle_gene_cor Man page Source code
vis_ccle_tpm Man page Source code
vis_gene_TIL_cor Man page
vis_gene_cor Man page
vis_gene_cor_cancer Man page
vis_gene_drug_response_asso Man page Source code
vis_gene_drug_response_diff Man page Source code
vis_gene_immune_cor Man page
vis_gene_msi_cor Man page
vis_gene_stemness_cor Man page
vis_gene_tmb_cor Man page
vis_identifier_cor Man page Source code
vis_identifier_grp_comparison Man page Source code
vis_identifier_grp_surv Man page Source code
vis_identifier_multi_cor Man page Source code
vis_pancan_anatomy Man page Source code
vis_pcawg_dist Man page Source code
vis_pcawg_gene_cor Man page Source code
vis_pcawg_unicox_tree Man page Source code
vis_toil_TvsN Man page Source code
vis_toil_TvsN_cancer Man page
vis_unicox_tree Man page Source code
UCSCXenaShiny documentation built on May 16, 2021, 9:06 a.m.