vis_pancan_anatomy: Visualize Single Gene Expression in Anatomy Location

Description Usage Arguments Value

View source: R/vis_pancan_value.R

Description

Visualize Single Gene Expression in Anatomy Location

Usage

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vis_pancan_anatomy(
  Gene = "TP53",
  Gender = c("Female", "Male"),
  data_type = "mRNA",
  option = "D"
)

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

Gender

a string, "Female" (default) or "Male".

data_type

choose gene profile type, including "mRNA","transcript","methylation","miRNA","protein","cnv_gistic2"

option

A character string indicating the colormap option to use. Four options are available: "magma" (or "A"), "inferno" (or "B"), "plasma" (or "C"), "viridis" (or "D", the default option) and "cividis" (or "E").

Value

a ggplot object


UCSCXenaShiny documentation built on Nov. 29, 2021, 9:06 a.m.