vis_gene_TIL_cor | R Documentation |
Heatmap for Correlation between Gene and Tumor Immune Infiltration (TIL)
vis_gene_TIL_cor( Gene = "TP53", cor_method = "spearman", data_type = "mRNA", sig = c("B cell_TIMER", "T cell CD4+_TIMER", "T cell CD8+_TIMER", "Neutrophil_TIMER", "Macrophage_TIMER", "Myeloid dendritic cell_TIMER"), Plot = "TRUE" )
Gene |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
cor_method |
correlation method |
data_type |
choose gene profile type, including "mRNA", "transcript", "protein", "mutation", "cnv" (-2, -1, 0, 1, 2), "cnv_gistic2", "methylation", "miRNA". |
sig |
Immune Signature, default: result from TIMER |
Plot |
output the plot directly, default 'TRUE' |
## Not run: p <- vis_gene_TIL_cor(Gene = "TP53") ## End(Not run)
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