vis_gene_cor_cancer | R Documentation |
Visualize Gene-Gene Correlation in a TCGA Cancer Type
vis_gene_cor_cancer( Gene1 = "CSF1R", Gene2 = "JAK3", data_type1 = "mRNA", data_type2 = "mRNA", purity_adj = TRUE, cancer_choose = "GBM", use_regline = TRUE, cor_method = "spearman", use_all = FALSE, alpha = 0.5, color = "#000000" )
Gene1 |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
Gene2 |
a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature ( |
data_type1 |
choose gene profile type for the first gene, including "mRNA","transcript","methylation","miRNA","protein","cnv_gistic2" |
data_type2 |
choose gene profile type for the second gene, including "mRNA","transcript","methylation","miRNA","protein","cnv_gistic2" |
purity_adj |
whether performing partial correlation adjusted by purity |
cancer_choose |
TCGA cohort name, e.g. "ACC". |
use_regline |
if |
cor_method |
correlation method. |
use_all |
use all sample, default |
alpha |
dot alpha. |
color |
dot color. |
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