vis_gene_drug_response_diff: Visualize Gene and Drug Response Difference with CCLE Data

In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Visualize Gene and Drug Response Difference with CCLE Data

Description

See analyze_gene_drug_response_diff for examples.

Usage

vis_gene_drug_response_diff(
  Gene = "TP53",
  tissue = "lung",
  Show.P.label = TRUE,
  Method = "wilcox.test",
  values = c("#DF2020", "#DDDF21"),
  alpha = 0.5
)

Arguments

Gene	a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").
tissue	select cell line origin tissue.
Show.P.label	TRUE or FALSE present p value with number or label *, **, *** and ****
Method	default method is wilcox.test
values	the color to fill tumor or normal
alpha	set alpha for dots.

Value

a ggplot object.

UCSCXenaShiny documentation built on March 7, 2023, 7 p.m.