Files in UCSCXenaShiny

Interactive Analysis of UCSC Xena Data

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/globalVariables.R R/GeomSplitViolin.R R/vis_identifier.R R/query_custom_value.R R/ezcor.R R/vis_pcawg_value.R R/utils-pipe.R R/ccle.R R/data.R R/query_toil_value_df.R R/xenashiny.R R/load_data.R R/tcga_surv.R R/analyze_gene_drug_response.R R/query_value.R R/run.R R/vis_analyze_gene_drug_response.R R/get_pancan_value.R R/zzz.R R/ope_pancan_value.R R/get_pcawg_value.R R/vis_pancan_value.R R/vis_ccle_value.R R/utils.R inst/doc/api.Rmd inst/doc/api.R

inst/doc/api.html

inst/modules_apps/app.R inst/modules_apps/xx_modules.R inst/modules_apps/simple_module_from_rstudio.R inst/shinyapp/App.R

inst/shinyapp/www/file.png

inst/shinyapp/www/xena_shiny-logo_white.png

inst/shinyapp/www/host.png

inst/shinyapp/www/site.png

inst/shinyapp/www/sample.png

inst/shinyapp/www/bootstrap4.css

inst/shinyapp/www/chooser-binding.js

inst/shinyapp/www/xena_shiny-logo.png

inst/shinyapp/www/cohort.png

inst/shinyapp/www/dataset.png

inst/shinyapp/www/js/bootstrap.js

inst/shinyapp/www/js/bootstrap.min.js.map

inst/shinyapp/www/js/bootstrap.bundle.js

inst/shinyapp/www/js/bootstrap.bundle.min.js

inst/shinyapp/www/js/bootstrap.js.map

inst/shinyapp/www/js/bootstrap.bundle.min.js.map

inst/shinyapp/www/js/bootstrap.bundle.js.map

inst/shinyapp/www/js/bootstrap.min.js

inst/shinyapp/www/css/bootstrap.min.css.map

inst/shinyapp/www/css/bootstrap-grid.css

inst/shinyapp/www/css/bootstrap-reboot.css

inst/shinyapp/www/css/bootstrap.css

inst/shinyapp/www/css/bootstrap-reboot.css.map

inst/shinyapp/www/css/bootstrap.css.map

inst/shinyapp/www/css/bootstrap-grid.min.css.map

inst/shinyapp/www/css/bootstrap-grid.css.map

inst/shinyapp/www/css/bootstrap-reboot.min.css

inst/shinyapp/www/css/bootstrap.min.css

inst/shinyapp/www/css/bootstrap-grid.min.css

inst/shinyapp/www/css/bootstrap-reboot.min.css.map

inst/shinyapp/shiny-doc/usage.md inst/shinyapp/shiny-doc/datasets.md inst/shinyapp/shiny-doc/citation.md inst/shinyapp/shiny-doc/terms.md inst/shinyapp/modules/modules-ga-surv-analysis.R inst/shinyapp/modules/modules-ga-matrix-correlation.R inst/shinyapp/modules/modules-pcawg-genecor.R inst/shinyapp/modules/modules-pcawg-search.R inst/shinyapp/modules/modules-pancan-anatomy.R inst/shinyapp/modules/modules-pancan-search.R inst/shinyapp/modules/modules-file-upload.R inst/shinyapp/modules/modules-ga-scatter-correlation.R inst/shinyapp/modules/modules-ccle-genecor.R inst/shinyapp/modules/modules-pcawg-unicox.R inst/shinyapp/modules/modules-survival-analysis.R inst/shinyapp/modules/modules-pancan-unicox.R inst/shinyapp/modules/modules-ccle-search.R inst/shinyapp/modules/modules-ccle-gene-drug-target.R inst/shinyapp/modules/modules-pancan-genecor.R inst/shinyapp/modules/modules-ga-group-comparison.R inst/shinyapp/modules/modules-ccle-gene-drug-respose-df.R inst/shinyapp/modules/home-pancan-search.R inst/shinyapp/modules/modules-pancan-radar.R inst/shinyapp/modules/modules-pancan-immune.R inst/shinyapp/modules/combo-single-gene-pan-cancer-analysis.R inst/shinyapp/modules/modules-pancan-search-cancer.R inst/shinyapp/modules/modules-pancan-til.R inst/shinyapp/modules/modules-pcawg-survival-analysis.R inst/shinyapp/ui/repository.R inst/shinyapp/ui/home.R inst/shinyapp/ui/general-analysis.R inst/shinyapp/ui/footer.R inst/shinyapp/ui/global.R inst/shinyapp/ui/developers.R inst/shinyapp/ui/help.R inst/shinyapp/ui/pancan-analysis.R inst/shinyapp/ui/chooser.R inst/shinyapp/server/repository.R inst/shinyapp/server/home.R inst/shinyapp/server/general-analysis.R inst/shinyapp/server/modules.R inst/shinyapp/server/global.R

inst/extdata/tcga_armcalls.rda

inst/extdata/ccle_drug_response_extend.rda

inst/extdata/pancan_identifier_list.rds

inst/extdata/XenaInfo.RData

build/vignette.rds

tests/testthat.R tests/testthat/test-vis_pancan_value.R tests/testthat/test-run_app.R vignettes/api.Rmd

data/tcga_genome_instability.rda

data/ccle_info.rda

data/pcawg_info.rda

data/TCGA.organ.rda

data/toil_info.rda

data/tcga_clinical.rda

data/tcga_purity.rda

data/ccle_absolute.rda

data/tcga_surv.rda

data/tcga_gtex.rda

data/pcawg_purity.rda

data/tcga_subtypes.rda

man/vis_pcawg_unicox_tree.Rd man/UCSCXenaShiny.Rd man/pcawg_purity.Rd man/vis_gene_cor_cancer.Rd man/ezcor.Rd man/keep_cat_cols.Rd man/tcga_subtypes.Rd man/available_hosts.Rd man/pcawg_info.Rd man/vis_unicox_tree.Rd man/app_run.Rd man/vis_gene_TIL_cor.Rd man/vis_toil_TvsN.Rd man/vis_gene_drug_response_asso.Rd man/load_data.Rd man/ezcor_partial_cor.Rd man/vis_gene_cor.Rd man/vis_identifier_cor.Rd man/query_molecule_value.Rd man/vis_gene_tmb_cor.Rd man/toil_info.Rd man/vis_toil_TvsN_cancer.Rd man/vis_pcawg_dist.Rd man/get_pancan_value.Rd man/analyze_gene_drug_response_diff.Rd man/vis_identifier_grp_comparison.Rd man/ezcor_batch.Rd man/vis_ccle_tpm.Rd man/vis_identifier_multi_cor.Rd man/analyze_gene_drug_response_asso.Rd man/vis_gene_stemness_cor.Rd man/query_toil_value_df.Rd man/pipe.Rd man/vis_gene_msi_cor.Rd man/ccle_absolute.Rd man/tcga_purity.Rd man/tcga_surv.Rd man/tcga_gtex.Rd man/vis_identifier_grp_surv.Rd man/ccle_info.Rd man/tcga_surv_analysis.Rd man/query_pancan_value.Rd man/tcga_tmb.Rd man/tcga_clinical.Rd man/vis_gene_immune_cor.Rd man/vis_gene_drug_response_diff.Rd man/vis_pancan_anatomy.Rd man/tcga_genome_instability.Rd man/vis_ccle_gene_cor.Rd man/vis_pcawg_gene_cor.Rd man/TCGA.organ.Rd

UCSCXenaShiny documentation built on March 7, 2023, 7 p.m.