inst/shinyapp/helper/pcawg_projects.md

In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

PCAWG project types

| Study Abbreviation | Study Name | | ------------------ | ---------------------------------------------------------- | | BLCA-US | Bladder Urothelial Cancer - TCGA, US | | BRCA-US | Breast Cancer - TCGA, US | | CESC-US | Cervical Squamous Cell Carcinoma - TCGA, US | | CLLE-ES | Chronic Lymphocytic Leukemia - ES | | COAD-US | Colon Adenocarcinoma - TCGA, US | | DLBC-US | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma - TCGA, US | | ESAD-UK | Esophageal Adenocarcinoma - UK | | GBM-US | Brain Glioblastoma Multiforme - TCGA, US | | HNSC-US | Head and Neck Squamous Cell Carcinoma - TCGA, US | | KICH-US | Kidney Chromophobe - TCGA, US | | KIRC-US | Kidney Renal Clear Cell Carcinoma - TCGA, US | | KIRP-US | Kidney Renal Papillary Cell Carcinoma - TCGA, US | | LAML-US | Acute Myeloid Leukemia - TCGA, US | | LGG-US | Brain Lower Grade Glioma - TCGA, US | | LIHC-US | Liver Hepatocellular carcinoma - TCGA, US | | LIRI-JP | Liver Cancer - RIKEN, JP | | LUAD-US | Lung Adenocarcinoma - TCGA, US | | LUSC-US | Lung Squamous Cell Carcinoma - TCGA, US | | MALY-DE | Malignant Lymphoma - DE | | OV-AU | Ovarian Cancer - AU | | OV-US | Ovarian Serous Cystadenocarcinoma - TCGA, US | | PACA-AU | Pancreatic Cancer - AU | | PRAD-US | Prostate Adenocarcinoma - TCGA, US | | READ-US | Rectum Adenocarcinoma - TCGA, US | | RECA-EU | Renal Cell Cancer - EU/FR | | SARC-US | Sarcoma - TCGA, US | | SKCM-US | Skin Cutaneous melanoma - TCGA, US | | STAD-US | Gastric Adenocarcinoma - TCGA, US | | THCA-US | Head and Neck Thyroid Carcinoma - TCGA, US | | UCEC-US | Uterine Corpus Endometrial Carcinoma- TCGA, US |

UCSCXenaShiny documentation built on May 29, 2024, 1:10 a.m.