vis_gene_msi_cor: Visualize Correlation between Gene and MSI (Microsatellite...

Description Usage Arguments Examples

Description

Visualize Correlation between Gene and MSI (Microsatellite instability)

Usage

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vis_gene_msi_cor(
  Gene = "TP53",
  cor_method = "spearman",
  data_type = "mRNA",
  Plot = "TRUE"
)

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

cor_method

correlation method

data_type

choose gene profile type, including "mRNA", "transcript", "protein", "mutation", "cnv" (-2, -1, 0, 1, 2), "cnv_gistic2", "methylation", "miRNA".

Plot

output the plot directly, default 'TRUE'

Examples

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## Not run: 
p <- vis_gene_msi_cor(Gene = "TP53")

## End(Not run)

UCSCXenaShiny documentation built on Nov. 17, 2021, 9:06 a.m.