datasets.md
In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Extra datasets cleaned from UCSCXena hubs or references are deposited in Zenodo repo.

You can download them directly from the Zenodo repo or using get_data() function provided in UCSCXenaShiny R package.

If you want to know the dataset source, you can check the "data_source" attribute.

e.g.,

> str(pancan_MSI)
tibble [11,139 x 3] (S3: tbl_df/tbl/data.frame)
 $ case_id     : chr [1:11139] "10.1038_ng.2273_B085" "10.1038_ng.2273_B099" "10.1038_ng.2273_R104" "10.1038_ng.2273_T26" ...
 $ cancer_type : chr [1:11139] "CHOL_10.1038_ng.2273" "CHOL_10.1038_ng.2273" "CHOL_10.1038_ng.2273" "CHOL_10.1038_ng.2273" ...
 $ MANTIS_Score: num [1:11139] 0.285 0.257 0.275 0.292 0.281 ...
 - attr(*, "data_source")= chr "DOI:https://doi.org/10.1200/PO.17.00073"