vis_gene_tmb_cor: Visualize Correlation between Gene and TMB (Tumor Mutation...

In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Visualize Correlation between Gene and TMB (Tumor Mutation Burden)

Description

Visualize Correlation between Gene and TMB (Tumor Mutation Burden)

Usage

vis_gene_tmb_cor(
  Gene = "TP53",
  cor_method = "spearman",
  data_type = "mRNA",
  Plot = "TRUE",
  opt_pancan = .opt_pancan
)

Arguments

Gene	a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").
cor_method	correlation method
data_type	choose gene profile type, including "mRNA", "transcript", "protein", "mutation", "cnv", "methylation", "miRNA".
Plot	output the plot directly, default 'TRUE'
opt_pancan	specify one dataset for some molercular profiles

Examples

## Not run: 
p <- vis_gene_tmb_cor(Gene = "TP53")

## End(Not run)

UCSCXenaShiny documentation built on May 29, 2024, 1:10 a.m.