vis_pcawg_unicox_tree: Visualize Single Gene Univariable Cox Result in PCAWG

In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Visualize Single Gene Univariable Cox Result in PCAWG

Description

Visualize Single Gene Univariable Cox Result in PCAWG

Usage

vis_pcawg_unicox_tree(
  Gene = "TP53",
  measure = "OS",
  data_type = "mRNA",
  threshold = 0.5,
  values = c("grey", "#E31A1C", "#377DB8"),
  opt_pancan = .opt_pancan
)

Arguments

Gene	a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").
measure	a survival measure, e.g. "OS".
data_type	choose gene profile type, including "mRNA","transcript","methylation","miRNA","protein","cnv"
threshold	a expression cutoff, 0.5 for median.
values	the color to fill tumor or normal
opt_pancan	specify one dataset for some molercular profiles

Value

a ggplot object

Examples

## Not run: 
p <- vis_pcawg_unicox_tree(Gene = "TP53")

## End(Not run)

UCSCXenaShiny documentation built on May 29, 2024, 1:10 a.m.