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inst/shinyapp/helper/tcga_types.md
In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data
TCGA cancer types
| Study Abbreviation | Study Name |
| :----------------- | :----------------------------------------------------------- |
| LAML | Acute Myeloid Leukemia |
| ACC | Adrenocortical carcinoma |
| BLCA | Bladder Urothelial Carcinoma |
| LGG | Brain Lower Grade Glioma |
| BRCA | Breast invasive carcinoma |
| CESC | Cervical squamous cell carcinoma and endocervical adenocarcinoma |
| CHOL | Cholangiocarcinoma |
| LCML | Chronic Myelogenous Leukemia |
| COAD | Colon adenocarcinoma |
| CNTL | Controls |
| ESCA | Esophageal carcinoma |
| FPPP | FFPE Pilot Phase II |
| GBM | Glioblastoma multiforme |
| HNSC | Head and Neck squamous cell carcinoma |
| KICH | Kidney Chromophobe |
| KIRC | Kidney renal clear cell carcinoma |
| KIRP | Kidney renal papillary cell carcinoma |
| LIHC | Liver hepatocellular carcinoma |
| LUAD | Lung adenocarcinoma |
| LUSC | Lung squamous cell carcinoma |
| DLBC | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma |
| MESO | Mesothelioma |
| MISC | Miscellaneous |
| OV | Ovarian serous cystadenocarcinoma |
| PAAD | Pancreatic adenocarcinoma |
| PCPG | Pheochromocytoma and Paraganglioma |
| PRAD | Prostate adenocarcinoma |
| READ | Rectum adenocarcinoma |
| SARC | Sarcoma |
| SKCM | Skin Cutaneous Melanoma |
| STAD | Stomach adenocarcinoma |
| TGCT | Testicular Germ Cell Tumors |
| THYM | Thymoma |
| THCA | Thyroid carcinoma |
| UCS | Uterine Carcinosarcoma |
| UCEC | Uterine Corpus Endometrial Carcinoma |
| UVM | Uveal Melanoma |
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UCSCXenaShiny documentation built on May 29, 2024, 1:10 a.m.
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TCGA cancer types
| Study Abbreviation | Study Name | | :----------------- | :----------------------------------------------------------- | | LAML | Acute Myeloid Leukemia | | ACC | Adrenocortical carcinoma | | BLCA | Bladder Urothelial Carcinoma | | LGG | Brain Lower Grade Glioma | | BRCA | Breast invasive carcinoma | | CESC | Cervical squamous cell carcinoma and endocervical adenocarcinoma | | CHOL | Cholangiocarcinoma | | LCML | Chronic Myelogenous Leukemia | | COAD | Colon adenocarcinoma | | CNTL | Controls | | ESCA | Esophageal carcinoma | | FPPP | FFPE Pilot Phase II | | GBM | Glioblastoma multiforme | | HNSC | Head and Neck squamous cell carcinoma | | KICH | Kidney Chromophobe | | KIRC | Kidney renal clear cell carcinoma | | KIRP | Kidney renal papillary cell carcinoma | | LIHC | Liver hepatocellular carcinoma | | LUAD | Lung adenocarcinoma | | LUSC | Lung squamous cell carcinoma | | DLBC | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | | MESO | Mesothelioma | | MISC | Miscellaneous | | OV | Ovarian serous cystadenocarcinoma | | PAAD | Pancreatic adenocarcinoma | | PCPG | Pheochromocytoma and Paraganglioma | | PRAD | Prostate adenocarcinoma | | READ | Rectum adenocarcinoma | | SARC | Sarcoma | | SKCM | Skin Cutaneous Melanoma | | STAD | Stomach adenocarcinoma | | TGCT | Testicular Germ Cell Tumors | | THYM | Thymoma | | THCA | Thyroid carcinoma | | UCS | Uterine Carcinosarcoma | | UCEC | Uterine Corpus Endometrial Carcinoma | | UVM | Uveal Melanoma |
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