VGAM: Vector Generalized Linear and Additive Models

An implementation of about 6 major classes of statistical regression models. At the heart of it are the vector generalized linear and additive model (VGLM/VGAM) classes, and the book "Vector Generalized Linear and Additive Models: With an Implementation in R" (Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of the statistical framework and VGAM package. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE, using Fisher scoring. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs (i.e., with smoothing). The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)---these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.

AuthorThomas W. Yee <t.yee@auckland.ac.nz>
Date of publication2017-01-11 08:59:31
MaintainerThomas Yee <t.yee@auckland.ac.nz>
LicenseGPL-2 | GPL-3
Version1.0-3
https://www.stat.auckland.ac.nz/~yee/VGAM

View on CRAN

Man pages

A1A2A3: The A1A2A3 Blood Group System

AA.Aa.aa: The AA-Aa-aa Blood Group System

AB.Ab.aB.ab: The AB-Ab-aB-ab Blood Group System

ABO: The ABO Blood Group System

acat: Ordinal Regression with Adjacent Categories Probabilities

AICvlm: Akaike's Information Criterion

alaplace3: Asymmetric Laplace Distribution Family Functions

alaplaceUC: The Laplace Distribution

amlbinomial: Binomial Logistic Regression by Asymmetric Maximum Likelihood...

amlexponential: Exponential Regression by Asymmetric Maximum Likelihood...

amlnormal: Asymmetric Least Squares Quantile Regression

amlpoisson: Poisson Regression by Asymmetric Maximum Likelihood...

AR1: Autoregressive Process with Order-1 Family Function

AR1EIM: Computation of the Exact EIM of an Order-1 Autoregressive...

AR1UC: The AR-1 Autoregressive Process

auuc: Auckland University Undergraduate Counts Data

auxposbernoulli.t: Auxiliary Function for the Positive Bernoulli Family Function...

backPain: Data on Back Pain Prognosis, from Anderson (1984)

beggs: Bacon and Eggs Data

benfUC: Benford's Distribution

benini: Benini Distribution Family Function

beniniUC: The Benini Distribution

betabinomial: Beta-binomial Distribution Family Function

betabinomialff: Beta-binomial Distribution Family Function

betabinomUC: The Beta-Binomial Distribution

betaff: The Two-parameter Beta Distribution Family Function

betageometric: Beta-geometric Distribution Family Function

betageomUC: The Beta-Geometric Distribution

betaII: Beta Distribution of the Second Kind

betanormUC: The Beta-Normal Distribution

betaprime: The Beta-Prime Distribution

betaR: The Two-parameter Beta Distribution Family Function

biamhcop: Ali-Mikhail-Haq Distribution Family Function

biamhcopUC: Ali-Mikhail-Haq Bivariate Distribution

biclaytoncop: Clayton Copula (Bivariate) Family Function

biclaytoncopUC: Clayton Copula (Bivariate) Distribution

BICvlm: Bayesian Information Criterion

bifgmcop: Farlie-Gumbel-Morgenstern's Bivariate Distribution Family...

bifgmcopUC: Farlie-Gumbel-Morgenstern's Bivariate Distribution

bifgmexp: Bivariate Farlie-Gumbel-Morgenstern Exponential Distribution...

bifrankcop: Frank's Bivariate Distribution Family Function

bifrankcopUC: Frank's Bivariate Distribution

bigamma.mckay: Bivariate Gamma: McKay's Distribution

bigumbelIexp: Gumbel's Type I Bivariate Distribution Family Function

bilogistic: Bivariate Logistic Distribution Family Function

bilogisUC: Bivariate Logistic Distribution

binom2.or: Bivariate Binary Regression with an Odds Ratio (Family...

binom2.orUC: Bivariate Binary Regression with an Odds Ratio

binom2.rho: Bivariate Probit Model (Family Function)

binom2.rhoUC: Bivariate Probit Model

binomialff: Binomial Family Function

binormal: Bivariate Normal Distribution Family Function

binormalcop: Gaussian Copula (Bivariate) Family Function

binormalUC: Bivariate Normal Distribution Cumulative Distribution...

binormcopUC: Gaussian Copula (Bivariate) Distribution

biplackettcop: Plackett's Bivariate Copula Family Function

biplackettcopUC: Plackett's Bivariate Copula

biplot-methods: Biplot of Constrained Regression Models

bisa: Birnbaum-Saunders Distribution Family Function

bisaUC: The Birnbaum-Saunders Distribution

bistudentt: Bivariate Student-t Family Function

bistudenttUC: Bivariate Student-t distribution cumulative distribution...

bmi.nz: Body Mass Index of New Zealand Adults Data

borel.tanner: Borel-Tanner Distribution Family Function

bortUC: The Borel-Tanner Distribution

brat: Bradley Terry Model

bratt: Bradley Terry Model With Ties

bratUC: Inputting Data to fit a Bradley Terry Model

calibrate: Model Calibrations

calibrate-methods: Calibration for Constrained Regression Models

calibrate.qrrvglm: Calibration for CQO and CAO models

calibrate.qrrvglm.control: Control Function for CQO/CAO Calibration

cao: Fitting Constrained Additive Ordination (CAO)

cao.control: Control Function for RR-VGAMs (CAO)

cardioid: Cardioid Distribution Family Function

cardUC: Cardioid Distribution

cauchit: Cauchit Link Function

cauchy: Cauchy Distribution Family Function

cdf.lmscreg: Cumulative Distribution Function for LMS Quantile Regression

cens.gumbel: Censored Gumbel Distribution

cens.normal: Censored Normal Distribution

cens.poisson: Censored Poisson Family Function

cfibrosis: Cystic Fibrosis Data

cgo: Redirects the user to cqo

chest.nz: Chest Pain in NZ Adults Data

chinese.nz: Chinese Population in New Zealand 1867-2001 Data

chisq: Chi-squared Distribution

clo: Redirects the User to rrvglm()

cloglog: Complementary Log-log Link Function

coalminers: Breathlessness and Wheeze Amongst Coalminers Data

Coef: Computes Model Coefficients and Quantities

Coef.qrrvglm: Returns Important Matrices etc. of a QO Object

Coef.qrrvglm-class: Class "Coef.qrrvglm"

Coef.rrvglm: Returns Important Matrices etc. of a RR-VGLM Object

Coef.rrvglm-class: Class "Coef.rrvglm"

coefvgam: Extract Model Coefficients of a vgam() Object

coefvlm: Extract Model Coefficients

Coef.vlm: Extract Model Coefficients for VLM Objects

CommonVGAMffArguments: Common VGAM Family Function Arguments

concoef: Extract Model Constrained/Canonical Coefficients

concoef-methods: Constrained (Canonical) Coefficients

confintvglm: Confidence Intervals for Parameters of VGLMs

constraints: Constraint Matrices

corbet: Corbet's Butterfly Data

cqo: Fitting Constrained Quadratic Ordination (CQO)

crashes: Crashes on New Zealand Roads in 2009

cratio: Ordinal Regression with Continuation Ratios

cumulative: Ordinal Regression with Cumulative Probabilities

dagum: Dagum Distribution Family Function

dagumUC: The Dagum Distribution

deermice: Captures of Peromyscus maniculatus, also known as deer mice.

deplot.lmscreg: Density Plot for LMS Quantile Regression

depvar: Response Variable Extracted

df.residual: Residual Degrees-of-Freedom

diffzeta: Differenced Zeta Distribution Family Function

diffzetaUC: Differenced Zeta Distribution

dirichlet: Fitting a Dirichlet Distribution

dirmul.old: Fitting a Dirichlet-Multinomial Distribution

dirmultinomial: Fitting a Dirichlet-Multinomial Distribution

double.cens.normal: Univariate Normal Distribution with Double Censoring

double.expbinomial: Double Exponential Binomial Distribution Family Function

ducklings: Relative Frequencies of Serum Proteins in White Pekin...

eexpUC: Expectiles of the Exponential Distribution

enormUC: Expectiles of the Normal Distribution

enzyme: Enzyme Data

erf: Error Function, and variants

erlang: Erlang Distribution

eunifUC: Expectiles of the Uniform Distribution

expexpff: Exponentiated Exponential Distribution

expexpff1: Exponentiated Exponential Distribution

expgeometric: Exponential Geometric Distribution Family Function

expgeometricUC: The Exponential Geometric Distribution

expint3: The Exponential Integral and Variants

explink: Exponential Link Function

explogff: Exponential Logarithmic Distribution Family Function

explogUC: The Exponential Logarithmic Distribution

exponential: Exponential Distribution

exppoisson: Exponential Poisson Distribution Family Function

exppoissonUC: The Exponential Poisson Distribution

felix: Felix Distribution Family Function

felixUC: The Felix Distribution

fff: F Distribution Family Function

fill: Creates a Matrix of Appropriate Dimension

finney44: Toxicity trial for insects

fisherz: Fisher's Z Link Function

fisk: Fisk Distribution family function

fiskUC: The Fisk Distribution

fittedvlm: Fitted Values of a VLM object

flourbeetle: Mortality of Flour Beetles from Carbon Disulphide

foldnormal: Folded Normal Distribution Family Function

foldnormUC: The Folded-Normal Distribution

foldsqrt: Folded Square Root Link Function

formulavlm: Model Formulae and Term Names for VGLMs

frechet: Frechet Distribution Family Function

frechetUC: The Frechet Distribution

freund61: Freund's (1961) Bivariate Extension of the Exponential...

gamma1: 1-parameter Gamma Distribution

gamma2: 2-parameter Gamma Distribution

gammahyperbola: Gamma Hyperbola Bivariate Distribution

gammaR: 2-parameter Gamma Distribution

garma: GARMA (Generalized Autoregressive Moving-Average) Models

gaussianff: Gaussian (Normal) Family Function

genbetaII: Generalized Beta Distribution of the Second Kind

genbetaIIUC: The Generalized Beta II Distribution

gengamma: Generalized Gamma distribution family function

gengammaUC: The Generalized Gamma Distribution

genpoisson: Generalized Poisson distribution

genpoisUC: The Generalized Poisson Distribution

genrayleigh: Generalized Rayleigh Distribution Family Function

genrayleighUC: The Generalized Rayleigh Distribution

geometric: Geometric (Truncated and Untruncated) Distributions

get.smart: Retrieve One Component of ".smart.prediction"

get.smart.prediction: Retrieves ".smart.prediction"

gev: Generalized Extreme Value Distribution Family Function

gevUC: The Generalized Extreme Value Distribution

gew: General Electric and Westinghouse Data

golf: Gamma-Ordinal Link Function

gompertz: Gompertz Distribution Family Function

gompertzUC: The Gompertz Distribution

gpd: Generalized Pareto Distribution Family Function

gpdUC: The Generalized Pareto Distribution

grain.us: Grain Prices Data in USA

grc: Row-Column Interaction Models including Goodman's RC...

gumbel: Gumbel Distribution Family Function

gumbelII: Gumbel-II Distribution Family Function

gumbelIIUC: The Gumbel-II Distribution

gumbelUC: The Gumbel Distribution

guplot: Gumbel Plot

has.intercept: Has a Fitted VGLM Got an Intercept Term?

hatvalues: Hat Values and Regression Deletion Diagnostics

hormone: Hormone Assay Data

hspider: Hunting Spider Data

huber: Huber's Least Favourable Distribution Family Function

huberUC: Huber's Least Favourable Distribution

Huggins89.t1: Table 1 of Huggins (1989)

hunua: Hunua Ranges Data

hyperg: Hypergeometric Family Function

hypersecant: Hyperbolic Secant Distribution Family Function

hzeta: Haight's Zeta Family Function

hzetaUC: Haight's Zeta Distribution

iam: Index from Array to Matrix

identitylink: Identity Link Function

inv.binomial: Inverse Binomial Distribution Family Function

Inv.gaussian: The Inverse Gaussian Distribution

inv.gaussianff: Inverse Gaussian Distribution Family Function

inv.lomax: Inverse Lomax Distribution Family Function

inv.lomaxUC: The Inverse Lomax Distribution

inv.paralogistic: Inverse Paralogistic Distribution Family Function

inv.paralogisticUC: The Inverse Paralogistic Distribution

is.buggy: Does the fitted object suffer from a known bug?

is.parallel: Parallelism Constraint Matrices

is.smart: Test For a Smart Object

is.zero: Zero Constraint Matrices

kendall.tau: Kendall's Tau Statistic

kumar: Kumaraswamy Distribution Family Function

kumarUC: The Kumaraswamy Distribution

lakeO: Annual catches on Lake Otamangakau from October 1974 to...

lambertW: The Lambert W function

laplace: Laplace Distribution

laplaceUC: The Laplace Distribution

latvar: Latent Variables

leipnik: Leipnik Distribution Family Function

lerch: Lerch Phi Function

leukemia: Acute Myelogenous Leukemia Survival Data

levy: Levy Distribution Family Function

lgammaff: Log-gamma Distribution Family Function

lgammaUC: The Log-Gamma Distribution

lindley: 1-parameter Gamma Distribution

lindUC: The Lindley Distribution

linkfun: Link Functions

linkfun.vglm: Link Functions for VGLMs

Links: Link functions for VGLM/VGAM/etc. families

lino: Generalized Beta Distribution Family Function

linoUC: The Generalized Beta Distribution (Libby and Novick, 1982)

lirat: Low-iron Rat Teratology Data

lms.bcg: LMS Quantile Regression with a Box-Cox transformation to a...

lms.bcn: LMS Quantile Regression with a Box-Cox Transformation to...

lms.yjn: LMS Quantile Regression with a Yeo-Johnson Transformation to...

log1mexp: Logarithms with an Unit Offset and Exponential Term

logc: Complementary-log Link Function

loge: Log Link Function, and Variants

logF: Natural Exponential Family Generalized Hyperbolic Secant...

logff: Logarithmic Distribution

logF.UC: log F Distribution

logistic: Logistic Distribution Family Function

logit: Logit Link Function

logitoffsetlink: Logit-with-an-Offset Link Function

loglaplace: Log-Laplace and Logit-Laplace Distribution Family Functions

loglapUC: The Log-Laplace Distribution

logLikvlm: Extract Log-likelihood for VGLMs/VGAMs/etc.

loglinb2: Loglinear Model for Two Binary Responses

loglinb3: Loglinear Model for Three Binary Responses

loglog: Log-log Link Function

lognormal: Lognormal Distribution

logoff: Log Link Function with an Offset

logUC: Logarithmic Distribution

lomax: Lomax Distribution Family Function

lomaxUC: The Lomax Distribution

lqnorm: Minimizing the L-q norm Family Function

lrtest: Likelihood Ratio Test of Nested Models

lvplot: Latent Variable Plot

lvplot.qrrvglm: Latent Variable Plot for QO models

lvplot.rrvglm: Latent Variable Plot for RR-VGLMs

machinists: Machinists Accidents

makeham: Makeham Distribution Family Function

makehamUC: The Makeham Distribution

margeff: Marginal effects for several categorical response models

marital.nz: New Zealand Marital Data

Max: Maximums

maxwell: Maxwell Distribution Family Function

maxwellUC: The Maxwell Distribution

mccullagh89: McCullagh (1989) Distribution Family Function

melbmaxtemp: Melbourne Daily Maximum Temperatures

meplot: Mean Excess Plot

micmen: Michaelis-Menten Model

mix2exp: Mixture of Two Exponential Distributions

mix2normal: Mixture of Two Univariate Normal Distributions

mix2poisson: Mixture of Two Poisson Distributions

MNSs: The MNSs Blood Group System

model.framevlm: Construct the Model Frame of a VLM Object

model.matrixvlm: Construct the Design Matrix of a VLM Object

moffset: Matrix Offset

multilogit: Multi-logit Link Function

multinomial: Multinomial Logit Model

nakagami: Nakagami Distribution Family Function

nakagamiUC: Nakagami Distribution

nbcanlink: Negative Binomial Canonical Link Function

nbolf: Negative Binomial-Ordinal Link Function

negbinomial: Negative Binomial Distribution Family Function

negbinomial.size: Negative Binomial Distribution Family Function With Known...

normal.vcm: Univariate Normal Distribution as a Varying-Coefficient Model

notdocumentedyet: Undocumented and Internally Used Functions and Classes

nparamvglm: Number of Parameters

oalog: One-Altered Logarithmic Distribution

oalogUC: One-Altered Logarithmic Distribution

oapospoisson: One-Altered Positive-Poisson Distribution

oapospoisUC: One-Altered Logarithmic Distribution

oazeta: One-Altered Zeta Distribution

oazetaUC: One-Altered Logarithmic Distribution

oilog: One-inflated Logarithmic Distribution Family Function

oilogUC: One-Inflated Logarithmic Distribution

oiposbinomial: One-Inflated Positive Binomial Distribution Family Function

oiposbinomUC: One-Inflated Positive Binomial Distribution

oipospoisson: One-inflated Positive Poisson Distribution Family Function

oipospoisUC: One-Inflated Positive Poisson Distribution

oizeta: One-inflated Zeta Distribution Family Function

oizetaUC: One-Inflated Zeta Distribution

oizipf: One-inflated Zipf Distribution Family Function

oizipfUC: One-Inflated Zipf Distribution

olym: 2008 and 2012 Summer Olympic Final Medal Count Data

Opt: Optimums

ordpoisson: Ordinal Poisson Family Function

otlog: One-truncated Logarithmic Distribution

otlogUC: One-truncated Logarithmic Distribution

otpospoisson: One-truncated Poisson Distribution

otpospoisUC: One-truncated Positive-Poisson Distribution

otzeta: One-truncated Zeta Distribution Family Function

otzetaUC: One-truncated Zeta Distribution

oxtemp: Oxford Temperature Data

paralogistic: Paralogistic Distribution Family Function

paralogisticUC: The Paralogistic Distribution

paretoff: Pareto and Truncated Pareto Distribution Family Functions

paretoIV: Pareto(IV/III/II) Distribution Family Functions

paretoIVUC: The Pareto(IV/III/II) Distributions

ParetoUC: The Pareto Distribution

perks: Perks Distribution Family Function

perksUC: The Perks Distribution

persp.qrrvglm: Perspective plot for QRR-VGLMs

pgamma.deriv: Derivatives of the Incomplete Gamma Integral

pgamma.deriv.unscaled: Derivatives of the Incomplete Gamma Integral (Unscaled...

plotdeplot.lmscreg: Density Plot for LMS Quantile Regression

plotqrrvglm: Model Diagnostic Plots for QRR-VGLMs

plotqtplot.lmscreg: Quantile Plot for LMS Quantile Regression

plotrcim0: Main Effects Plot for a Row-Column Interaction Model (RCIM)

plotvgam: Default VGAM Plotting

plotvgam.control: Control Function for plotvgam()

plotvglm: Plots for VGLMs

pneumo: Pneumoconiosis in Coalminers Data

poissonff: Poisson Family Function

poisson.points: Poisson-points-on-a-plane/volume Distances Distribution

poisson.pointsUC: Poisson Points Distribution

polf: Poisson-Ordinal Link Function

polonoUC: The Poisson Lognormal Distribution

posbernoulli.b: Positive Bernoulli Family Function with Behavioural Effects

posbernoulli.t: Positive Bernoulli Family Function with Time Effects

posbernoulli.tb: Positive Bernoulli Family Function with Time and Behavioural...

posbernUC: Positive Bernoulli Sequence Model

posbinomial: Positive Binomial Distribution Family Function

posbinomUC: Positive-Binomial Distribution

posgeomUC: Positive-Geometric Distribution

posnegbinomial: Positive Negative Binomial Distribution Family Function

posnegbinUC: Positive-Negative Binomial Distribution

posnormal: Positive Normal Distribution Family Function

posnormUC: The Positive-Normal Distribution

pospoisson: Positive Poisson Distribution Family Function

pospoisUC: Positive-Poisson Distribution

powerlink: Power Link Function

prats: Pregnant Rats Toxological Experiment Data

predictqrrvglm: Predict Method for a CQO fit

predictvglm: Predict Method for a VGLM fit

prentice74: Prentice (1974) Log-gamma Distribution

prinia: Yellow-bellied Prinia

probit: Probit Link Function

propodds: Proportional Odds Model for Ordinal Regression

prplot: Probability Plots for Categorical Data Analysis

put.smart: Adds a List to the End of the List ".smart.prediction"

qrrvglm.control: Control Function for QRR-VGLMs (CQO)

qtplot.gumbel: Quantile Plot for Gumbel Regression

qtplot.lmscreg: Quantile Plot for LMS Quantile Regression

quasibinomialff: Quasi-Binomial Family Function

quasipoissonff: Quasi-Poisson Family Function

qvar: Quasi-variances Extraction Function

QvarUC: Quasi-variances Preprocessing Function

rayleigh: Rayleigh Distribution Family Function

rayleighUC: The Rayleigh Distribution

Rcim: Mark the Baseline of Row and Column on a Matrix data

rcqo: Constrained Quadratic Ordination

rdiric: The Dirichlet distribution

rec.exp1: Upper Record Values from a 1-parameter Exponential...

reciprocal: Reciprocal Link Function

rec.normal: Upper Record Values from a Univariate Normal Distribution

rhobit: Rhobit Link Function

riceff: Rice Distribution Family Function

riceUC: The Rice Distribution

rigff: Reciprocal Inverse Gaussian distribution

rlplot.gevff: Return Level Plot for GEV Fits

rrar: Nested reduced-rank autoregressive models for multiple time...

rrvglm: Fitting Reduced-Rank Vector Generalized Linear Models...

rrvglm-class: Class "rrvglm"

rrvglm.control: Control Function for rrvglm()

rrvglm.optim.control: Control Function for rrvglm() Calling optim()

ruge: Rutherford-Geiger Polonium Data

s: Defining Smooths in VGAM Formulas

sc.studentt2: Scaled Student t Distribution with 2 df Family Function

sc.t2UC: Expectiles/Quantiles of the Scaled Student t Distribution...

Select: Select Variables for a Formula Response or the RHS of a...

seq2binomial: The Two-stage Sequential Binomial Distribution Family...

setup.smart: Smart Prediction Setup

simplex: Simplex Distribution Family Function

simplexUC: Simplex Distribution

simulate.vlm: Simulate Responses for VGLMs and VGAMs

sinmad: Singh-Maddala Distribution Family Function

sinmadUC: The Singh-Maddala Distribution

skellam: Skellam Distribution Family Function

skellamUC: The Skellam Distribution

skewnormal: Univariate Skew-Normal Distribution Family Function

skewnormUC: Skew-Normal Distribution

slash: Slash Distribution Family Function

slashUC: Slash Distribution

smart.expression: S Expression for Smart Functions

smart.mode.is: Determine What Mode the Smart Prediction is In

smartpred: Smart Prediction

sm.os: Defining O'Sullivan Spline Smooths in VGAM Formulas

sm.ps: Defining Penalized Spline Smooths in VGAM Formulas

sratio: Ordinal Regression with Stopping Ratios

studentt: Student t Distribution

summarypvgam: Summarizing Penalized Vector Generalized Additive Model Fits

summaryvgam: Summarizing Vector Generalized Additive Model Fits

summaryvglm: Summarizing Vector Generalized Linear Model Fits

SURff: Seemingly Unrelated Regressions Family Function

SurvS4: Create a Survival Object

SurvS4-class: Class "SurvS4"

tikuv: Short-tailed Symmetric Distribution Family Function

tikuvUC: A Short-tailed Symmetric Distribution

tobit: Tobit Model

tobitUC: The Tobit Distribution

Tol: Tolerances

topple: Topp-Leone Distribution Family Function

toppleUC: The Topp-Leone Distribution

toxop: Toxoplasmosis Data

triangle: Triangle Distribution Family Function

triangleUC: The Triangle Distribution

trplot: Trajectory Plot

trplot.qrrvglm: Trajectory plot for QRR-VGLMs

truncparetoUC: The Truncated Pareto Distribution

truncweibull: Truncated Weibull Distribution Family Function

ucberk: University California Berkeley Graduate Admissions

undocumented-methods: Undocumented Methods Functions

uninormal: Univariate Normal Distribution

UtilitiesVGAM: Utility Functions for the VGAM Package

V1: V1 Flying-Bombs Hits in London

vcovvlm: Calculate Variance-Covariance Matrix for a Fitted VLM or...

venice: Venice Maximum Sea Levels Data

vgam: Fitting Vector Generalized Additive Models

vgam-class: Class "vgam"

vgam.control: Control Function for vgam()

VGAM-package: Vector Generalized Linear and Additive Models

vglm: Fitting Vector Generalized Linear Models

vglm-class: Class "vglm"

vglm.control: Control Function for vglm()

vglmff-class: Class "vglmff"

vonmises: von Mises Distribution Family Function

vsmooth.spline: Vector cubic smoothing spline

waitakere: Waitakere Ranges Data

waldff: Wald Distribution Family Function

weibull.mean: Weibull Distribution Family Function, Parameterized by the...

weibullR: Weibull Distribution Family Function

weightsvglm: Prior and Working Weights of a VGLM fit

wine: Bitterness in Wine Data

wrapup.smart: Cleans Up After Smart Prediction

yeo.johnson: Yeo-Johnson Transformation

yip88: Zero-Inflated Poisson Distribution (Yip (1988) algorithm)

yulesimon: Yule-Simon Family Function

yulesimonUC: Yule-Simon Distribution

zabinomial: Zero-Altered Binomial Distribution

zabinomUC: Zero-Altered Binomial Distribution

zageometric: Zero-Altered Geometric Distribution

zageomUC: Zero-Altered Geometric Distribution

zanegbinomial: Zero-Altered Negative Binomial Distribution

zanegbinUC: Zero-Altered Negative Binomial Distribution

zapoisson: Zero-Altered Poisson Distribution

zapoisUC: Zero-Altered Poisson Distribution

zero: The zero Argument in VGAM Family Functions

zeta: Riemann's Zeta Function

zetaff: Zeta Distribution Family Function

zetaUC: The Zeta Distribution

zibinomial: Zero-Inflated Binomial Distribution Family Function

zibinomUC: Zero-Inflated Binomial Distribution

zigeometric: Zero-Inflated Geometric Distribution Family Function

zigeomUC: Zero-Inflated Geometric Distribution

zinegbinomial: Zero-Inflated Negative Binomial Distribution Family Function

zinegbinUC: Zero-Inflated Negative Binomial Distribution

zipebcom: Exchangeable Bivariate cloglog Odds-ratio Model From a...

zipf: Zipf Distribution Family Function

zipfUC: The Zipf Distribution

zipoisson: Zero-Inflated Poisson Distribution Family Function

zipoisUC: Zero-Inflated Poisson Distribution

zoabetaR: Zero- and One-Inflated Beta Distribution Family Function

zoabetaUC: The Zero/One-Inflated Beta Distribution

Files in this package

VGAM
VGAM/BUGS
VGAM/inst
VGAM/inst/CITATION
VGAM/inst/doc
VGAM/inst/doc/crVGAM.Rnw
VGAM/inst/doc/crVGAM.pdf
VGAM/inst/doc/categoricalVGAM.Rnw
VGAM/inst/doc/categoricalVGAM.pdf
VGAM/inst/doc/categoricalVGAM.R
VGAM/inst/doc/crVGAM.R
VGAM/src
VGAM/src/vmux3.c
VGAM/src/vmux.f
VGAM/src/caqo3.c
VGAM/src/rgam3.c
VGAM/src/vlinpack3.f
VGAM/src/zeta3.c
VGAM/src/rgam.f
VGAM/src/lerchphi.c
VGAM/src/fgam.f
VGAM/src/muxr3.c
VGAM/src/tyeepolygamma3.c
VGAM/src/vlinpack2.f
VGAM/src/lms.f
VGAM/src/vcall2.f
VGAM/src/vlinpack1.f
VGAM/src/vgam3.c
VGAM/src/vgam.f
VGAM/src/gautr.c
VGAM/src/cqof.f
VGAM/src/ei.f
VGAM/src/tyeepolygamma.f
VGAM/src/vdigami.f
VGAM/src/specfun3.c
VGAM/src/veigen.f
VGAM/NAMESPACE
VGAM/demo
VGAM/demo/distributions.R
VGAM/demo/vgam.R
VGAM/demo/cqo.R
VGAM/demo/00Index
VGAM/demo/zipoisson.R
VGAM/demo/binom2.or.R
VGAM/demo/lmsqreg.R
VGAM/NEWS
VGAM/data
VGAM/data/gew.txt.gz
VGAM/data/waitakere.txt.bz2
VGAM/data/oxtemp.txt.gz
VGAM/data/bmi.nz.txt.xz
VGAM/data/ucberk.txt.gz
VGAM/data/beggs.rda
VGAM/data/finney44.rda
VGAM/data/crashmc.rda
VGAM/data/crashf.rda
VGAM/data/ducklings.rda
VGAM/data/backPain.rda
VGAM/data/olym08.txt.gz
VGAM/data/backPain.txt.gz
VGAM/data/melbmaxtemp.rda
VGAM/data/hunua.txt.bz2
VGAM/data/crashtr.rda
VGAM/data/V1.txt.gz
VGAM/data/crashp.rda
VGAM/data/alclevels.rda
VGAM/data/crashbc.rda
VGAM/data/auuc.rda
VGAM/data/leukemia.rda
VGAM/data/crashi.rda
VGAM/data/prats.txt.gz
VGAM/data/grain.us.txt.bz2
VGAM/data/lakeO.rda
VGAM/data/coalminers.txt.gz
VGAM/data/toxop.rda
VGAM/data/venice.rda
VGAM/data/Huggins89table1.rda
VGAM/data/enzyme.txt.gz
VGAM/data/olym12.txt.gz
VGAM/data/cfibrosis.rda
VGAM/data/venice90.rda
VGAM/data/prinia.rda
VGAM/data/corbet.rda
VGAM/data/lirat.txt.gz
VGAM/data/car.all.rda
VGAM/data/Huggins89.t1.rda
VGAM/data/machinists.txt.gz
VGAM/data/wine.rda
VGAM/data/chinese.nz.txt.gz
VGAM/data/flourbeetle.rda
VGAM/data/hspider.rda
VGAM/data/pneumo.rda
VGAM/data/hormone.txt.bz2
VGAM/data/alcoff.rda
VGAM/data/deermice.rda
VGAM/data/ruge.rda
VGAM/data/marital.nz.rda
VGAM/data/chest.nz.txt.bz2
VGAM/R
VGAM/R/family.functions.R
VGAM/R/vlm.wfit.q
VGAM/R/sm.os.R
VGAM/R/rrvglm.fit.q
VGAM/R/family.actuary.R VGAM/R/family.censored.R VGAM/R/plot.vgam.R VGAM/R/family.qreg.R
VGAM/R/vsmooth.spline.q
VGAM/R/cqo.fit.q
VGAM/R/qtplot.q
VGAM/R/family.oneinf.R
VGAM/R/vglm.fit.q
VGAM/R/predict.vglm.q
VGAM/R/family.glmgam.R
VGAM/R/links.q
VGAM/R/cao.R VGAM/R/family.math.R
VGAM/R/vgam.fit.q
VGAM/R/vcov.pvgam.R
VGAM/R/model.matrix.vglm.q
VGAM/R/fittedvlm.R VGAM/R/family.robust.R VGAM/R/family.ts.R
VGAM/R/summary.vgam.q
VGAM/R/family.loglin.R
VGAM/R/summary.vlm.q
VGAM/R/family.circular.R VGAM/R/vlm.R
VGAM/R/logLik.vlm.q
VGAM/R/vgam.control.q
VGAM/R/family.categorical.R
VGAM/R/build.terms.vlm.q
VGAM/R/family.extremes.R
VGAM/R/generic.q
VGAM/R/family.genetic.R
VGAM/R/calibrate.q
VGAM/R/qrrvglm.control.q
VGAM/R/aamethods.q
VGAM/R/print.vlm.q
VGAM/R/family.positive.R VGAM/R/vglm.R
VGAM/R/mux.q
VGAM/R/family.rcqo.R VGAM/R/family.rcim.R VGAM/R/family.zeroinf.R
VGAM/R/cao.fit.q
VGAM/R/nobs.R VGAM/R/Links.R VGAM/R/simulate.vglm.R VGAM/R/family.aunivariate.R VGAM/R/family.nbd.R
VGAM/R/print.vglm.q
VGAM/R/family.bivariate.R VGAM/R/vgam.R
VGAM/R/rrvglm.control.q
VGAM/R/family.basics.R
VGAM/R/deviance.vlm.q
VGAM/R/family.mixture.R VGAM/R/getxvlmaug.R VGAM/R/family.survival.R VGAM/R/cqo.R VGAM/R/sm.ps.R VGAM/R/family.binomial.R VGAM/R/profilevglm.R VGAM/R/rrvglm.R
VGAM/R/predict.vgam.q
VGAM/R/effects.vglm.q
VGAM/R/family.others.R VGAM/R/smart.R
VGAM/R/coef.vlm.q
VGAM/R/family.exp.R VGAM/R/family.rrr.R VGAM/R/family.nonlinear.R VGAM/R/family.normal.R
VGAM/R/formula.vlm.q
VGAM/R/psv2magic.R
VGAM/R/predict.vlm.q
VGAM/R/lrwaldtest.R
VGAM/R/vglm.control.q
VGAM/R/residuals.vlm.q
VGAM/R/confint.vlm.R VGAM/R/family.sur.R
VGAM/R/s.q
VGAM/R/vgam.match.q
VGAM/R/family.univariate.R VGAM/R/family.vglm.R VGAM/R/plot.vglm.R
VGAM/R/summary.vglm.q
VGAM/R/s.vam.q
VGAM/R/bAIC.q
VGAM/R/attrassign.R
VGAM/vignettes
VGAM/vignettes/crVGAM.Rnw
VGAM/vignettes/crVGAM.bib
VGAM/vignettes/categoricalVGAM.Rnw
VGAM/vignettes/categoricalVGAMbib.bib
VGAM/MD5
VGAM/build
VGAM/build/vignette.rds
VGAM/DESCRIPTION
VGAM/ChangeLog
VGAM/man
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VGAM/LICENCE.note

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