VGAM: Vector Generalized Linear and Additive Models

An implementation of about 6 major classes of statistical regression models. At the heart of it are the vector generalized linear and additive model (VGLM/VGAM) classes, and the book "Vector Generalized Linear and Additive Models: With an Implementation in R" (Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of the statistical framework and VGAM package. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE, using Fisher scoring. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs (i.e., with smoothing). The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)---these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.

Install the latest version of this package by entering the following in R:
install.packages("VGAM")
AuthorThomas W. Yee <t.yee@auckland.ac.nz>
Date of publication2017-01-11 08:59:31
MaintainerThomas Yee <t.yee@auckland.ac.nz>
LicenseGPL-2 | GPL-3
Version1.0-3
https://www.stat.auckland.ac.nz/~yee/VGAM

View on CRAN

Man pages

A1A2A3: The A1A2A3 Blood Group System

AA.Aa.aa: The AA-Aa-aa Blood Group System

AB.Ab.aB.ab: The AB-Ab-aB-ab Blood Group System

ABO: The ABO Blood Group System

acat: Ordinal Regression with Adjacent Categories Probabilities

AICvlm: Akaike's Information Criterion

alaplace3: Asymmetric Laplace Distribution Family Functions

alaplaceUC: The Laplace Distribution

amlbinomial: Binomial Logistic Regression by Asymmetric Maximum Likelihood...

amlexponential: Exponential Regression by Asymmetric Maximum Likelihood...

amlnormal: Asymmetric Least Squares Quantile Regression

amlpoisson: Poisson Regression by Asymmetric Maximum Likelihood...

AR1: Autoregressive Process with Order-1 Family Function

AR1EIM: Computation of the Exact EIM of an Order-1 Autoregressive...

AR1UC: The AR-1 Autoregressive Process

auuc: Auckland University Undergraduate Counts Data

auxposbernoulli.t: Auxiliary Function for the Positive Bernoulli Family Function...

backPain: Data on Back Pain Prognosis, from Anderson (1984)

beggs: Bacon and Eggs Data

benfUC: Benford's Distribution

benini: Benini Distribution Family Function

beniniUC: The Benini Distribution

betabinomial: Beta-binomial Distribution Family Function

betabinomialff: Beta-binomial Distribution Family Function

betabinomUC: The Beta-Binomial Distribution

betaff: The Two-parameter Beta Distribution Family Function

betageometric: Beta-geometric Distribution Family Function

betageomUC: The Beta-Geometric Distribution

betaII: Beta Distribution of the Second Kind

betanormUC: The Beta-Normal Distribution

betaprime: The Beta-Prime Distribution

betaR: The Two-parameter Beta Distribution Family Function

biamhcop: Ali-Mikhail-Haq Distribution Family Function

biamhcopUC: Ali-Mikhail-Haq Bivariate Distribution

biclaytoncop: Clayton Copula (Bivariate) Family Function

biclaytoncopUC: Clayton Copula (Bivariate) Distribution

BICvlm: Bayesian Information Criterion

bifgmcop: Farlie-Gumbel-Morgenstern's Bivariate Distribution Family...

bifgmcopUC: Farlie-Gumbel-Morgenstern's Bivariate Distribution

bifgmexp: Bivariate Farlie-Gumbel-Morgenstern Exponential Distribution...

bifrankcop: Frank's Bivariate Distribution Family Function

bifrankcopUC: Frank's Bivariate Distribution

bigamma.mckay: Bivariate Gamma: McKay's Distribution

bigumbelIexp: Gumbel's Type I Bivariate Distribution Family Function

bilogistic: Bivariate Logistic Distribution Family Function

bilogisUC: Bivariate Logistic Distribution

binom2.or: Bivariate Binary Regression with an Odds Ratio (Family...

binom2.orUC: Bivariate Binary Regression with an Odds Ratio

binom2.rho: Bivariate Probit Model (Family Function)

binom2.rhoUC: Bivariate Probit Model

binomialff: Binomial Family Function

binormal: Bivariate Normal Distribution Family Function

binormalcop: Gaussian Copula (Bivariate) Family Function

binormalUC: Bivariate Normal Distribution Cumulative Distribution...

binormcopUC: Gaussian Copula (Bivariate) Distribution

biplackettcop: Plackett's Bivariate Copula Family Function

biplackettcopUC: Plackett's Bivariate Copula

biplot-methods: Biplot of Constrained Regression Models

bisa: Birnbaum-Saunders Distribution Family Function

bisaUC: The Birnbaum-Saunders Distribution

bistudentt: Bivariate Student-t Family Function

bistudenttUC: Bivariate Student-t distribution cumulative distribution...

bmi.nz: Body Mass Index of New Zealand Adults Data

borel.tanner: Borel-Tanner Distribution Family Function

bortUC: The Borel-Tanner Distribution

brat: Bradley Terry Model

bratt: Bradley Terry Model With Ties

bratUC: Inputting Data to fit a Bradley Terry Model

calibrate: Model Calibrations

calibrate-methods: Calibration for Constrained Regression Models

calibrate.qrrvglm: Calibration for CQO and CAO models

calibrate.qrrvglm.control: Control Function for CQO/CAO Calibration

cao: Fitting Constrained Additive Ordination (CAO)

cao.control: Control Function for RR-VGAMs (CAO)

cardioid: Cardioid Distribution Family Function

cardUC: Cardioid Distribution

cauchit: Cauchit Link Function

cauchy: Cauchy Distribution Family Function

cdf.lmscreg: Cumulative Distribution Function for LMS Quantile Regression

cens.gumbel: Censored Gumbel Distribution

cens.normal: Censored Normal Distribution

cens.poisson: Censored Poisson Family Function

cfibrosis: Cystic Fibrosis Data

cgo: Redirects the user to cqo

chest.nz: Chest Pain in NZ Adults Data

chinese.nz: Chinese Population in New Zealand 1867-2001 Data

chisq: Chi-squared Distribution

clo: Redirects the User to rrvglm()

cloglog: Complementary Log-log Link Function

coalminers: Breathlessness and Wheeze Amongst Coalminers Data

Coef: Computes Model Coefficients and Quantities

Coef.qrrvglm: Returns Important Matrices etc. of a QO Object

Coef.qrrvglm-class: Class "Coef.qrrvglm"

Coef.rrvglm: Returns Important Matrices etc. of a RR-VGLM Object

Coef.rrvglm-class: Class "Coef.rrvglm"

coefvgam: Extract Model Coefficients of a vgam() Object

coefvlm: Extract Model Coefficients

Coef.vlm: Extract Model Coefficients for VLM Objects

CommonVGAMffArguments: Common VGAM Family Function Arguments

concoef: Extract Model Constrained/Canonical Coefficients

concoef-methods: Constrained (Canonical) Coefficients

confintvglm: Confidence Intervals for Parameters of VGLMs

constraints: Constraint Matrices

corbet: Corbet's Butterfly Data

cqo: Fitting Constrained Quadratic Ordination (CQO)

crashes: Crashes on New Zealand Roads in 2009

cratio: Ordinal Regression with Continuation Ratios

cumulative: Ordinal Regression with Cumulative Probabilities

dagum: Dagum Distribution Family Function

dagumUC: The Dagum Distribution

deermice: Captures of Peromyscus maniculatus, also known as deer mice.

deplot.lmscreg: Density Plot for LMS Quantile Regression

depvar: Response Variable Extracted

df.residual: Residual Degrees-of-Freedom

diffzeta: Differenced Zeta Distribution Family Function

diffzetaUC: Differenced Zeta Distribution

dirichlet: Fitting a Dirichlet Distribution

dirmul.old: Fitting a Dirichlet-Multinomial Distribution

dirmultinomial: Fitting a Dirichlet-Multinomial Distribution

double.cens.normal: Univariate Normal Distribution with Double Censoring

double.expbinomial: Double Exponential Binomial Distribution Family Function

ducklings: Relative Frequencies of Serum Proteins in White Pekin...

eexpUC: Expectiles of the Exponential Distribution

enormUC: Expectiles of the Normal Distribution

enzyme: Enzyme Data

erf: Error Function, and variants

erlang: Erlang Distribution

eunifUC: Expectiles of the Uniform Distribution

expexpff: Exponentiated Exponential Distribution

expexpff1: Exponentiated Exponential Distribution

expgeometric: Exponential Geometric Distribution Family Function

expgeometricUC: The Exponential Geometric Distribution

expint3: The Exponential Integral and Variants

explink: Exponential Link Function

explogff: Exponential Logarithmic Distribution Family Function

explogUC: The Exponential Logarithmic Distribution

exponential: Exponential Distribution

exppoisson: Exponential Poisson Distribution Family Function

exppoissonUC: The Exponential Poisson Distribution

felix: Felix Distribution Family Function

felixUC: The Felix Distribution

fff: F Distribution Family Function

fill: Creates a Matrix of Appropriate Dimension

finney44: Toxicity trial for insects

fisherz: Fisher's Z Link Function

fisk: Fisk Distribution family function

fiskUC: The Fisk Distribution

fittedvlm: Fitted Values of a VLM object

flourbeetle: Mortality of Flour Beetles from Carbon Disulphide

foldnormal: Folded Normal Distribution Family Function

foldnormUC: The Folded-Normal Distribution

foldsqrt: Folded Square Root Link Function

formulavlm: Model Formulae and Term Names for VGLMs

frechet: Frechet Distribution Family Function

frechetUC: The Frechet Distribution

freund61: Freund's (1961) Bivariate Extension of the Exponential...

gamma1: 1-parameter Gamma Distribution

gamma2: 2-parameter Gamma Distribution

gammahyperbola: Gamma Hyperbola Bivariate Distribution

gammaR: 2-parameter Gamma Distribution

garma: GARMA (Generalized Autoregressive Moving-Average) Models

gaussianff: Gaussian (Normal) Family Function

genbetaII: Generalized Beta Distribution of the Second Kind

genbetaIIUC: The Generalized Beta II Distribution

gengamma: Generalized Gamma distribution family function

gengammaUC: The Generalized Gamma Distribution

genpoisson: Generalized Poisson distribution

genpoisUC: The Generalized Poisson Distribution

genrayleigh: Generalized Rayleigh Distribution Family Function

genrayleighUC: The Generalized Rayleigh Distribution

geometric: Geometric (Truncated and Untruncated) Distributions

get.smart: Retrieve One Component of ".smart.prediction"

get.smart.prediction: Retrieves ".smart.prediction"

gev: Generalized Extreme Value Distribution Family Function

gevUC: The Generalized Extreme Value Distribution

gew: General Electric and Westinghouse Data

golf: Gamma-Ordinal Link Function

gompertz: Gompertz Distribution Family Function

gompertzUC: The Gompertz Distribution

gpd: Generalized Pareto Distribution Family Function

gpdUC: The Generalized Pareto Distribution

grain.us: Grain Prices Data in USA

grc: Row-Column Interaction Models including Goodman's RC...

gumbel: Gumbel Distribution Family Function

gumbelII: Gumbel-II Distribution Family Function

gumbelIIUC: The Gumbel-II Distribution

gumbelUC: The Gumbel Distribution

guplot: Gumbel Plot

has.intercept: Has a Fitted VGLM Got an Intercept Term?

hatvalues: Hat Values and Regression Deletion Diagnostics

hormone: Hormone Assay Data

hspider: Hunting Spider Data

huber: Huber's Least Favourable Distribution Family Function

huberUC: Huber's Least Favourable Distribution

Huggins89.t1: Table 1 of Huggins (1989)

hunua: Hunua Ranges Data

hyperg: Hypergeometric Family Function

hypersecant: Hyperbolic Secant Distribution Family Function

hzeta: Haight's Zeta Family Function

hzetaUC: Haight's Zeta Distribution

iam: Index from Array to Matrix

identitylink: Identity Link Function

inv.binomial: Inverse Binomial Distribution Family Function

Inv.gaussian: The Inverse Gaussian Distribution

inv.gaussianff: Inverse Gaussian Distribution Family Function

inv.lomax: Inverse Lomax Distribution Family Function

inv.lomaxUC: The Inverse Lomax Distribution

inv.paralogistic: Inverse Paralogistic Distribution Family Function

inv.paralogisticUC: The Inverse Paralogistic Distribution

is.buggy: Does the fitted object suffer from a known bug?

is.parallel: Parallelism Constraint Matrices

is.smart: Test For a Smart Object

is.zero: Zero Constraint Matrices

kendall.tau: Kendall's Tau Statistic

kumar: Kumaraswamy Distribution Family Function

kumarUC: The Kumaraswamy Distribution

lakeO: Annual catches on Lake Otamangakau from October 1974 to...

lambertW: The Lambert W function

laplace: Laplace Distribution

laplaceUC: The Laplace Distribution

latvar: Latent Variables

leipnik: Leipnik Distribution Family Function

lerch: Lerch Phi Function

leukemia: Acute Myelogenous Leukemia Survival Data

levy: Levy Distribution Family Function

lgammaff: Log-gamma Distribution Family Function

lgammaUC: The Log-Gamma Distribution

lindley: 1-parameter Gamma Distribution

lindUC: The Lindley Distribution

linkfun: Link Functions

linkfun.vglm: Link Functions for VGLMs

Links: Link functions for VGLM/VGAM/etc. families

lino: Generalized Beta Distribution Family Function

linoUC: The Generalized Beta Distribution (Libby and Novick, 1982)

lirat: Low-iron Rat Teratology Data

lms.bcg: LMS Quantile Regression with a Box-Cox transformation to a...

lms.bcn: LMS Quantile Regression with a Box-Cox Transformation to...

lms.yjn: LMS Quantile Regression with a Yeo-Johnson Transformation to...

log1mexp: Logarithms with an Unit Offset and Exponential Term

logc: Complementary-log Link Function

loge: Log Link Function, and Variants

logF: Natural Exponential Family Generalized Hyperbolic Secant...

logff: Logarithmic Distribution

logF.UC: log F Distribution

logistic: Logistic Distribution Family Function

logit: Logit Link Function

logitoffsetlink: Logit-with-an-Offset Link Function

loglaplace: Log-Laplace and Logit-Laplace Distribution Family Functions

loglapUC: The Log-Laplace Distribution

logLikvlm: Extract Log-likelihood for VGLMs/VGAMs/etc.

loglinb2: Loglinear Model for Two Binary Responses

loglinb3: Loglinear Model for Three Binary Responses

loglog: Log-log Link Function

lognormal: Lognormal Distribution

logoff: Log Link Function with an Offset

logUC: Logarithmic Distribution

lomax: Lomax Distribution Family Function

lomaxUC: The Lomax Distribution

lqnorm: Minimizing the L-q norm Family Function

lrtest: Likelihood Ratio Test of Nested Models

lvplot: Latent Variable Plot

lvplot.qrrvglm: Latent Variable Plot for QO models

lvplot.rrvglm: Latent Variable Plot for RR-VGLMs

machinists: Machinists Accidents

makeham: Makeham Distribution Family Function

makehamUC: The Makeham Distribution

margeff: Marginal effects for several categorical response models

marital.nz: New Zealand Marital Data

Max: Maximums

maxwell: Maxwell Distribution Family Function

maxwellUC: The Maxwell Distribution

mccullagh89: McCullagh (1989) Distribution Family Function

melbmaxtemp: Melbourne Daily Maximum Temperatures

meplot: Mean Excess Plot

micmen: Michaelis-Menten Model

mix2exp: Mixture of Two Exponential Distributions

mix2normal: Mixture of Two Univariate Normal Distributions

mix2poisson: Mixture of Two Poisson Distributions

MNSs: The MNSs Blood Group System

model.framevlm: Construct the Model Frame of a VLM Object

model.matrixvlm: Construct the Design Matrix of a VLM Object

moffset: Matrix Offset

multilogit: Multi-logit Link Function

multinomial: Multinomial Logit Model

nakagami: Nakagami Distribution Family Function

nakagamiUC: Nakagami Distribution

nbcanlink: Negative Binomial Canonical Link Function

nbolf: Negative Binomial-Ordinal Link Function

negbinomial: Negative Binomial Distribution Family Function

negbinomial.size: Negative Binomial Distribution Family Function With Known...

normal.vcm: Univariate Normal Distribution as a Varying-Coefficient Model

notdocumentedyet: Undocumented and Internally Used Functions and Classes

nparamvglm: Number of Parameters

oalog: One-Altered Logarithmic Distribution

oalogUC: One-Altered Logarithmic Distribution

oapospoisson: One-Altered Positive-Poisson Distribution

oapospoisUC: One-Altered Logarithmic Distribution

oazeta: One-Altered Zeta Distribution

oazetaUC: One-Altered Logarithmic Distribution

oilog: One-inflated Logarithmic Distribution Family Function

oilogUC: One-Inflated Logarithmic Distribution

oiposbinomial: One-Inflated Positive Binomial Distribution Family Function

oiposbinomUC: One-Inflated Positive Binomial Distribution

oipospoisson: One-inflated Positive Poisson Distribution Family Function

oipospoisUC: One-Inflated Positive Poisson Distribution

oizeta: One-inflated Zeta Distribution Family Function

oizetaUC: One-Inflated Zeta Distribution

oizipf: One-inflated Zipf Distribution Family Function

oizipfUC: One-Inflated Zipf Distribution

olym: 2008 and 2012 Summer Olympic Final Medal Count Data

Opt: Optimums

ordpoisson: Ordinal Poisson Family Function

otlog: One-truncated Logarithmic Distribution

otlogUC: One-truncated Logarithmic Distribution

otpospoisson: One-truncated Poisson Distribution

otpospoisUC: One-truncated Positive-Poisson Distribution

otzeta: One-truncated Zeta Distribution Family Function

otzetaUC: One-truncated Zeta Distribution

oxtemp: Oxford Temperature Data

paralogistic: Paralogistic Distribution Family Function

paralogisticUC: The Paralogistic Distribution

paretoff: Pareto and Truncated Pareto Distribution Family Functions

paretoIV: Pareto(IV/III/II) Distribution Family Functions

paretoIVUC: The Pareto(IV/III/II) Distributions

ParetoUC: The Pareto Distribution

perks: Perks Distribution Family Function

perksUC: The Perks Distribution

persp.qrrvglm: Perspective plot for QRR-VGLMs

pgamma.deriv: Derivatives of the Incomplete Gamma Integral

pgamma.deriv.unscaled: Derivatives of the Incomplete Gamma Integral (Unscaled...

plotdeplot.lmscreg: Density Plot for LMS Quantile Regression

plotqrrvglm: Model Diagnostic Plots for QRR-VGLMs

plotqtplot.lmscreg: Quantile Plot for LMS Quantile Regression

plotrcim0: Main Effects Plot for a Row-Column Interaction Model (RCIM)

plotvgam: Default VGAM Plotting

plotvgam.control: Control Function for plotvgam()

plotvglm: Plots for VGLMs

pneumo: Pneumoconiosis in Coalminers Data

poissonff: Poisson Family Function

poisson.points: Poisson-points-on-a-plane/volume Distances Distribution

poisson.pointsUC: Poisson Points Distribution

polf: Poisson-Ordinal Link Function

polonoUC: The Poisson Lognormal Distribution

posbernoulli.b: Positive Bernoulli Family Function with Behavioural Effects

posbernoulli.t: Positive Bernoulli Family Function with Time Effects

posbernoulli.tb: Positive Bernoulli Family Function with Time and Behavioural...

posbernUC: Positive Bernoulli Sequence Model

posbinomial: Positive Binomial Distribution Family Function

posbinomUC: Positive-Binomial Distribution

posgeomUC: Positive-Geometric Distribution

posnegbinomial: Positive Negative Binomial Distribution Family Function

posnegbinUC: Positive-Negative Binomial Distribution

posnormal: Positive Normal Distribution Family Function

posnormUC: The Positive-Normal Distribution

pospoisson: Positive Poisson Distribution Family Function

pospoisUC: Positive-Poisson Distribution

powerlink: Power Link Function

prats: Pregnant Rats Toxological Experiment Data

predictqrrvglm: Predict Method for a CQO fit

predictvglm: Predict Method for a VGLM fit

prentice74: Prentice (1974) Log-gamma Distribution

prinia: Yellow-bellied Prinia

probit: Probit Link Function

propodds: Proportional Odds Model for Ordinal Regression

prplot: Probability Plots for Categorical Data Analysis

put.smart: Adds a List to the End of the List ".smart.prediction"

qrrvglm.control: Control Function for QRR-VGLMs (CQO)

qtplot.gumbel: Quantile Plot for Gumbel Regression

qtplot.lmscreg: Quantile Plot for LMS Quantile Regression

quasibinomialff: Quasi-Binomial Family Function

quasipoissonff: Quasi-Poisson Family Function

qvar: Quasi-variances Extraction Function

QvarUC: Quasi-variances Preprocessing Function

rayleigh: Rayleigh Distribution Family Function

rayleighUC: The Rayleigh Distribution

Rcim: Mark the Baseline of Row and Column on a Matrix data

rcqo: Constrained Quadratic Ordination

rdiric: The Dirichlet distribution

rec.exp1: Upper Record Values from a 1-parameter Exponential...

reciprocal: Reciprocal Link Function

rec.normal: Upper Record Values from a Univariate Normal Distribution

rhobit: Rhobit Link Function

riceff: Rice Distribution Family Function

riceUC: The Rice Distribution

rigff: Reciprocal Inverse Gaussian distribution

rlplot.gevff: Return Level Plot for GEV Fits

rrar: Nested reduced-rank autoregressive models for multiple time...

rrvglm: Fitting Reduced-Rank Vector Generalized Linear Models...

rrvglm-class: Class "rrvglm"

rrvglm.control: Control Function for rrvglm()

rrvglm.optim.control: Control Function for rrvglm() Calling optim()

ruge: Rutherford-Geiger Polonium Data

s: Defining Smooths in VGAM Formulas

sc.studentt2: Scaled Student t Distribution with 2 df Family Function

sc.t2UC: Expectiles/Quantiles of the Scaled Student t Distribution...

Select: Select Variables for a Formula Response or the RHS of a...

seq2binomial: The Two-stage Sequential Binomial Distribution Family...

setup.smart: Smart Prediction Setup

simplex: Simplex Distribution Family Function

simplexUC: Simplex Distribution

simulate.vlm: Simulate Responses for VGLMs and VGAMs

sinmad: Singh-Maddala Distribution Family Function

sinmadUC: The Singh-Maddala Distribution

skellam: Skellam Distribution Family Function

skellamUC: The Skellam Distribution

skewnormal: Univariate Skew-Normal Distribution Family Function

skewnormUC: Skew-Normal Distribution

slash: Slash Distribution Family Function

slashUC: Slash Distribution

smart.expression: S Expression for Smart Functions

smart.mode.is: Determine What Mode the Smart Prediction is In

smartpred: Smart Prediction

sm.os: Defining O'Sullivan Spline Smooths in VGAM Formulas

sm.ps: Defining Penalized Spline Smooths in VGAM Formulas

sratio: Ordinal Regression with Stopping Ratios

studentt: Student t Distribution

summarypvgam: Summarizing Penalized Vector Generalized Additive Model Fits

summaryvgam: Summarizing Vector Generalized Additive Model Fits

summaryvglm: Summarizing Vector Generalized Linear Model Fits

SURff: Seemingly Unrelated Regressions Family Function

SurvS4: Create a Survival Object

SurvS4-class: Class "SurvS4"

tikuv: Short-tailed Symmetric Distribution Family Function

tikuvUC: A Short-tailed Symmetric Distribution

tobit: Tobit Model

tobitUC: The Tobit Distribution

Tol: Tolerances

topple: Topp-Leone Distribution Family Function

toppleUC: The Topp-Leone Distribution

toxop: Toxoplasmosis Data

triangle: Triangle Distribution Family Function

triangleUC: The Triangle Distribution

trplot: Trajectory Plot

trplot.qrrvglm: Trajectory plot for QRR-VGLMs

truncparetoUC: The Truncated Pareto Distribution

truncweibull: Truncated Weibull Distribution Family Function

ucberk: University California Berkeley Graduate Admissions

undocumented-methods: Undocumented Methods Functions

uninormal: Univariate Normal Distribution

UtilitiesVGAM: Utility Functions for the VGAM Package

V1: V1 Flying-Bombs Hits in London

vcovvlm: Calculate Variance-Covariance Matrix for a Fitted VLM or...

venice: Venice Maximum Sea Levels Data

vgam: Fitting Vector Generalized Additive Models

vgam-class: Class "vgam"

vgam.control: Control Function for vgam()

VGAM-package: Vector Generalized Linear and Additive Models

vglm: Fitting Vector Generalized Linear Models

vglm-class: Class "vglm"

vglm.control: Control Function for vglm()

vglmff-class: Class "vglmff"

vonmises: von Mises Distribution Family Function

vsmooth.spline: Vector cubic smoothing spline

waitakere: Waitakere Ranges Data

waldff: Wald Distribution Family Function

weibull.mean: Weibull Distribution Family Function, Parameterized by the...

weibullR: Weibull Distribution Family Function

weightsvglm: Prior and Working Weights of a VGLM fit

wine: Bitterness in Wine Data

wrapup.smart: Cleans Up After Smart Prediction

yeo.johnson: Yeo-Johnson Transformation

yip88: Zero-Inflated Poisson Distribution (Yip (1988) algorithm)

yulesimon: Yule-Simon Family Function

yulesimonUC: Yule-Simon Distribution

zabinomial: Zero-Altered Binomial Distribution

zabinomUC: Zero-Altered Binomial Distribution

zageometric: Zero-Altered Geometric Distribution

zageomUC: Zero-Altered Geometric Distribution

zanegbinomial: Zero-Altered Negative Binomial Distribution

zanegbinUC: Zero-Altered Negative Binomial Distribution

zapoisson: Zero-Altered Poisson Distribution

zapoisUC: Zero-Altered Poisson Distribution

zero: The zero Argument in VGAM Family Functions

zeta: Riemann's Zeta Function

zetaff: Zeta Distribution Family Function

zetaUC: The Zeta Distribution

zibinomial: Zero-Inflated Binomial Distribution Family Function

zibinomUC: Zero-Inflated Binomial Distribution

zigeometric: Zero-Inflated Geometric Distribution Family Function

zigeomUC: Zero-Inflated Geometric Distribution

zinegbinomial: Zero-Inflated Negative Binomial Distribution Family Function

zinegbinUC: Zero-Inflated Negative Binomial Distribution

zipebcom: Exchangeable Bivariate cloglog Odds-ratio Model From a...

zipf: Zipf Distribution Family Function

zipfUC: The Zipf Distribution

zipoisson: Zero-Inflated Poisson Distribution Family Function

zipoisUC: Zero-Inflated Poisson Distribution

zoabetaR: Zero- and One-Inflated Beta Distribution Family Function

zoabetaUC: The Zero/One-Inflated Beta Distribution

Functions

A1A2A3 Man page
A1A2A3.orig Man page
a2m Man page
AA.Aa.aa Man page
AAaa.nohw Man page
AB.Ab.aB.ab Man page
abbott Man page
ABO Man page
acat Man page
acat.deriv Man page
add1 Man page
add1.vgam Man page
add1.vglm Man page
add.arg Man page
add.constraints Man page
add.hookey Man page
adjust.Dmat.expression Man page
AIC Man page
AIC,ANY-method Man page
AICc Man page
AICc,ANY-method Man page
AICc,qrrvglm-method Man page
AICc,rrvglm-method Man page
AICc,vgam-method Man page
AICc,vglm-method Man page
AICc,vlm-method Man page
AICqrrvglm Man page
AIC.qrrvglm Man page
AIC,qrrvglm-method Man page
AICrrvgam Man page
AIC,rrvgam-method Man page
AICrrvglm Man page
AIC.rrvglm Man page
AIC,rrvglm-method Man page
AICvgam Man page
AIC.vgam Man page
AIC,vgam-method Man page
AICvglm Man page
AIC.vglm Man page
AIC,vglm-method Man page
AICvlm Man page
AIC.vlm Man page
AIC,vlm-method Man page
alaplace1 Man page
alaplace1.control Man page
alaplace2 Man page
alaplace2.control Man page
alaplace3 Man page
alaplace3.control Man page
alclevels Man page
alcoff Man page
alias.vgam Man page
alias.vglm Man page
aml Man page
amlbinomial Man page
amlexponential Man page
amlnormal Man page
amlpoisson Man page
anova.vgam Man page
anova.vglm Man page
AR1 Man page
AR1.control Man page
AR1EIM Man page
AR1.gammas Man page
arwz2wz Man page
as.character.SurvS4 Man page
as.char.expression Man page
as.data.frame.SurvS4 Man page
as.vanova Man page
attrassign Man page
attrassigndefault Man page
attrassignlm Man page
attrassign,lm-method Man page
auuc Man page
aux.posbernoulli.t Man page
azprocedure Man page
backPain Man page
beggs Man page
Benford Man page
Benini Man page
benini1 Man page
beta4 Man page
Betabinom Man page
betabinomial Man page
betabinomialff Man page
betaff Man page
betaffqn Man page
Betageom Man page
betageometric Man page
betaII Man page
Betanorm Man page
betaprime Man page
betaR Man page
better.exponential Man page
biamhcop Man page
Biamhcop Man page
BIC Man page
BIC,ANY-method Man page
biclaytoncop Man page
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Frechet Man page
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Init.mu Man page
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inverse.gaussianff Man page
Inv.gaussian Man page
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Kayfun.studentt Man page
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Log Man page
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Tol,qrrvglm-method Man page
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Tol.uqo Man page
Tol,uqo-method Man page
topple Man page
Topple Man page
toxop Man page
triangle Man page
Triangle Man page
trivial.constraints Man page
trplot Man page
trplot.qrrvglm Man page
trplot,qrrvglm-method Man page
trplot,qrrvglm,uqo-method Man page
trplot,rrvgam-method Man page
trplot,uqo-method Man page
truncgeometric Man page
truncpareto Man page
Truncpareto Man page
truncweibull Man page
truncweibullff Man page
TypicalVGAMfamilyFunction Man page
TypicalVGAMlink Man page
ucberk Man page
uninormal Man page
update_default Man page
update_formula Man page
update.vgam Man page
update.vglm Man page
uqo Man page
uqo-class Man page
uqo.fit Man page
UtilitiesVGAM Man page
V1 Man page
valid.vglmff Man page
valid.vknotl2 Man page
valt Man page
valt.1iter Man page
valt.2iter Man page
valt.control Man page
varassign Man page
variable.names Man page
variable.names,ANY-method Man page
variable.names,grc-method Man page
variable.names,qrrvglm-method Man page
variable.namesrrvglm Man page
variable.names,rrvglm-method Man page
variable.names,vgam-method Man page
variable.names,vglm-method Man page
variable.namesvlm Man page
variable.names,vlm-method Man page
vbacksub Man page
vchol Man page
vchol.greenstadt Man page
vcontrol.expression Man page
vcov Man page
vcov,ANY-method Man page
vcovdefault Man page
vcov.pvgam Man page
vcov.pvgam-class Man page
vcov,pvgam-method Man page
vcovqrrvglm Man page
vcov.qrrvglm-class Man page
vcov,qrrvglm-method Man page
vcovrrvglm Man page
vcov,rrvglm-method Man page
vcov,vglm-method Man page
vcovvlm Man page
vcov.vlm Man page
vcov,vlm-method Man page
veigen Man page
vellipse Man page
venice Man page
venice90 Man page
vforsub Man page
vgam Man page
VGAM Man page
vgam-class Man page
vgam.control Man page
VGAMenv Man page
vgam.fit Man page
vgam.match Man page
vgam.nlchisq Man page
VGAM-package Man page
vgety Man page
vglm Man page
vglm-class Man page
vglm.control Man page
vglmff-class Man page
vglm.fit Man page
vglm.garma.control Man page
vglm.multinomial.control Man page
vglm.multinomial.deviance.control Man page
vglm.VGAMcategorical.control Man page
vindex Man page
vlabel Man page
vlm Man page
vlm2lm.model.matrix Man page
vlm-class Man page
vlm.control Man page
vlmsmall-class Man page
vlm.wfit Man page
vnonlinear.control Man page
vonmises Man page
vpairs.profile Man page
vplot Man page
vplot.default Man page
vplot.factor Man page
vplot,factor-method Man page
vplot.list Man page
vplot,list-method Man page
vplot.matrix Man page
vplot,matrix-method Man page
vplot.numeric Man page
vplot,numeric-method Man page
vplot.profile Man page
vsmooth.spline Man page
vsmooth.spline-class Man page
vsmooth.spline.fit-class Man page
vvplot.factor Man page
vweighted.mean.default Man page
waitakere Man page
waldff Man page
waldtest Man page
waldtest,ANY-method Man page
waldtest_default Man page
waldtest_formula Man page
waldtest_vglm Man page
weibull3 Man page
weibullff Man page
weibull.lsh Man page
weibull.mean Man page
weibullR Man page
weights Man page
weightsvglm Man page
weights,vglm-method Man page
weights,vlm-method Man page
wine Man page
Wr1 Man page
Wr2 Man page
wrapup.smart Man page
wweighted.mean Man page
wweights Man page
w.wz.merge Man page
w.y.check Man page
yeo.johnson Man page
yformat Man page
yip88 Man page
ylim.scale Man page
Yules Man page
yulesimon Man page
Zabinom Man page
zabinomial Man page
zabinomialff Man page
Zageom Man page
zageometric Man page
zageometricff Man page
Zanegbin Man page
zanegbinomial Man page
zanegbinomialff Man page
Zapois Man page
zapoisson Man page
zapoissonff Man page
zero Man page
zeroarg Man page
zeta Man page
Zeta Man page
Zeta.aux Man page
zetaff Man page
Zibinom Man page
zibinomial Man page
zibinomialff Man page
Zigeom Man page
zigeometric Man page
zigeometricff Man page
Zinegbin Man page
zinegbinomial Man page
zinegbinomialff Man page
zipebcom Man page
zipf Man page
Zipf Man page
Zipois Man page
zipoisson Man page
zipoissonff Man page
Zoabeta Man page
zoabetaR Man page
Zoibetabinom Man page

Files

BUGS
inst
inst/CITATION
inst/doc
inst/doc/crVGAM.Rnw
inst/doc/crVGAM.pdf
inst/doc/categoricalVGAM.Rnw
inst/doc/categoricalVGAM.pdf
inst/doc/categoricalVGAM.R inst/doc/crVGAM.R
src
src/vmux3.c
src/vmux.f
src/caqo3.c
src/rgam3.c
src/vlinpack3.f
src/zeta3.c
src/rgam.f
src/lerchphi.c
src/fgam.f
src/muxr3.c
src/tyeepolygamma3.c
src/vlinpack2.f
src/lms.f
src/vcall2.f
src/vlinpack1.f
src/vgam3.c
src/vgam.f
src/gautr.c
src/cqof.f
src/ei.f
src/tyeepolygamma.f
src/vdigami.f
src/specfun3.c
src/veigen.f
NAMESPACE
demo
demo/distributions.R demo/vgam.R demo/cqo.R
demo/00Index
demo/zipoisson.R demo/binom2.or.R demo/lmsqreg.R
NEWS
data
data/gew.txt.gz
data/waitakere.txt.bz2
data/oxtemp.txt.gz
data/bmi.nz.txt.xz
data/ucberk.txt.gz
data/beggs.rda
data/finney44.rda
data/crashmc.rda
data/crashf.rda
data/ducklings.rda
data/backPain.rda
data/olym08.txt.gz
data/backPain.txt.gz
data/melbmaxtemp.rda
data/hunua.txt.bz2
data/crashtr.rda
data/V1.txt.gz
data/crashp.rda
data/alclevels.rda
data/crashbc.rda
data/auuc.rda
data/leukemia.rda
data/crashi.rda
data/prats.txt.gz
data/grain.us.txt.bz2
data/lakeO.rda
data/coalminers.txt.gz
data/toxop.rda
data/venice.rda
data/Huggins89table1.rda
data/enzyme.txt.gz
data/olym12.txt.gz
data/cfibrosis.rda
data/venice90.rda
data/prinia.rda
data/corbet.rda
data/lirat.txt.gz
data/car.all.rda
data/Huggins89.t1.rda
data/machinists.txt.gz
data/wine.rda
data/chinese.nz.txt.gz
data/flourbeetle.rda
data/hspider.rda
data/pneumo.rda
data/hormone.txt.bz2
data/alcoff.rda
data/deermice.rda
data/ruge.rda
data/marital.nz.rda
data/chest.nz.txt.bz2
R
R/family.functions.R
R/vlm.wfit.q
R/sm.os.R
R/rrvglm.fit.q
R/family.actuary.R R/family.censored.R R/plot.vgam.R R/family.qreg.R
R/vsmooth.spline.q
R/cqo.fit.q
R/qtplot.q
R/family.oneinf.R
R/vglm.fit.q
R/predict.vglm.q
R/family.glmgam.R
R/links.q
R/cao.R R/family.math.R
R/vgam.fit.q
R/vcov.pvgam.R
R/model.matrix.vglm.q
R/fittedvlm.R R/family.robust.R R/family.ts.R
R/summary.vgam.q
R/family.loglin.R
R/summary.vlm.q
R/family.circular.R R/vlm.R
R/logLik.vlm.q
R/vgam.control.q
R/family.categorical.R
R/build.terms.vlm.q
R/family.extremes.R
R/generic.q
R/family.genetic.R
R/calibrate.q
R/qrrvglm.control.q
R/aamethods.q
R/print.vlm.q
R/family.positive.R R/vglm.R
R/mux.q
R/family.rcqo.R R/family.rcim.R R/family.zeroinf.R
R/cao.fit.q
R/nobs.R R/Links.R R/simulate.vglm.R R/family.aunivariate.R R/family.nbd.R
R/print.vglm.q
R/family.bivariate.R R/vgam.R
R/rrvglm.control.q
R/family.basics.R
R/deviance.vlm.q
R/family.mixture.R R/getxvlmaug.R R/family.survival.R R/cqo.R R/sm.ps.R R/family.binomial.R R/profilevglm.R R/rrvglm.R
R/predict.vgam.q
R/effects.vglm.q
R/family.others.R R/smart.R
R/coef.vlm.q
R/family.exp.R R/family.rrr.R R/family.nonlinear.R R/family.normal.R
R/formula.vlm.q
R/psv2magic.R
R/predict.vlm.q
R/lrwaldtest.R
R/vglm.control.q
R/residuals.vlm.q
R/confint.vlm.R R/family.sur.R
R/s.q
R/vgam.match.q
R/family.univariate.R R/family.vglm.R R/plot.vglm.R
R/summary.vglm.q
R/s.vam.q
R/bAIC.q
R/attrassi