WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data

Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.

Getting started

Package details

AuthorUlrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]
MaintainerUlrich Wittelsbuerger <ulrich.wittelsbuerger@uni-duesseldorf.de>
LicenseGPL (>= 2)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

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WhopGenome documentation built on May 1, 2019, 10:12 p.m.