vcf_isINDEL: Determines whether the last vcf_parse-call returned a InDel...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Returns TRUE if the last call to vcf_parse/VCF_parse returned an InDel.
Usage
1
vcf_isINDEL(vcff)
Arguments
vcff
VCF file handle
Details
Use .Call("VCF_isInDel", vcff ) to eliminate the overhead of using the R wrapper function.
Value
TRUE or FALSE.
Author(s)
Ulrich Wittelsbuerger
See Also
vcf_isSNP
Examples
1
2
3
4
vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
vcf_parseNextSNP( vcffile )
vcf_getPos( vcffile )
vcf_isINDEL( vcffile )
WhopGenome documentation built on May 1, 2019, 10:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
Returns TRUE if the last call to vcf_parse/VCF_parse returned an InDel.
Usage
1 | vcf_isINDEL(vcff)
|
Arguments
vcff |
VCF file handle |
Details
Use .Call("VCF_isInDel", vcff ) to eliminate the overhead of using the R wrapper function.
Value
TRUE or FALSE.
Author(s)
Ulrich Wittelsbuerger
See Also
vcf_isSNP
Examples
1 2 3 4 | vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
vcf_parseNextSNP( vcffile )
vcf_getPos( vcffile )
vcf_isINDEL( vcffile )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.