vcf_readLineVec: Read a line of data from the given VCF file and return the...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Read a line of data from the given VCF file and return the fields as vector elements
Usage
1
2
vcf_readLineVec(vcffh)
vcf_readLineVecFiltered(vcffh)
Arguments
vcffh
VCF file handle
Details
The latter version applies filtering set up with vcf_addfilter.
Use .Call("VCF_readLineTSV", vcffh ) or .Call("VCF_readLineTSVFiltered", vcffh ) respectively
to eliminate the overhead of using the R wrapper function.
Value
A vector where each element is a field from a line of data in the VCF
Author(s)
Ulrich Wittelsbuerger
See Also
vcf_addfilter,vcf_describefilters
Examples
1
2
vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
vcf_readLineVec( vcffile )
WhopGenome documentation built on May 1, 2019, 10:12 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Read a line of data from the given VCF file and return the fields as vector elements
Usage
1 2 | vcf_readLineVec(vcffh)
vcf_readLineVecFiltered(vcffh)
|
Arguments
vcffh |
VCF file handle |
Details
The latter version applies filtering set up with vcf_addfilter. Use .Call("VCF_readLineTSV", vcffh ) or .Call("VCF_readLineTSVFiltered", vcffh ) respectively to eliminate the overhead of using the R wrapper function.
Value
A vector where each element is a field from a line of data in the VCF
Author(s)
Ulrich Wittelsbuerger
See Also
vcf_addfilter,vcf_describefilters
Examples
1 2 | vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
vcf_readLineVec( vcffile )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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