tabix_open: Open Tabix-indexed file for subsequent access with other...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Open Tabix-indexed file for subsequent access with other tabix_ methods
Usage
1
tabix_open(filename)
Arguments
filename
String, name of tabix-indexed file to open
Details
As filename, specify the data file, not the index file ending in .tbi!
Value
Tabix file handle
Author(s)
Ulrich Wittelsbuerger
See Also
Examples
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##
## Example :
##
gffgzfile <- system.file("extdata", "ex.gff3.gz", package = "WhopGenome" )
gffh <- tabix_open( gffgzfile )
gffh
tabix_close( gffh )
gffh
WhopGenome documentation built on May 1, 2019, 10:12 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Open Tabix-indexed file for subsequent access with other tabix_ methods
Usage
1 | tabix_open(filename)
|
Arguments
filename |
String, name of tabix-indexed file to open |
Details
As filename, specify the data file, not the index file ending in .tbi!
Value
Tabix file handle
Author(s)
Ulrich Wittelsbuerger
See Also
Examples
1 2 3 4 5 6 7 8 | ##
## Example :
##
gffgzfile <- system.file("extdata", "ex.gff3.gz", package = "WhopGenome" )
gffh <- tabix_open( gffgzfile )
gffh
tabix_close( gffh )
gffh
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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