vcf_eor: Determine whether all lines in the selected region have been...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data

Description Usage Arguments Details Value Author(s) Examples

When reading SNP info within a region defined by VCF_setRegion, this function returns TRUE/FALSE to indicate whether or not all lines within that region have been read.

1	vcf_eor( vcffh )

vcffh

Handle of a VCF file opened by VCF_open

Use .Call("VCF_eor", vcffh ) to eliminate the overhead of using the R wrapper function.

TRUE if all SNPs inside the previously defined region have been read.

Ulrich Wittelsbuerger

	vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
	vcf_setregion(vcffile, "Y", 1, 100000 )
	while( !vcf_eor(vcffile) )
	{
		vcf_readLineVec( vcffile )
	}