vcf_clearfilters: Removes all filter steps.

Description Usage Arguments Details Value Author(s) Examples

View source: R/filter.R

Description

Removes all active filters, no pre-filtering of returned lines will take place. There is no function to undo this step.

Usage

1

Arguments

vcffh

VCF file handle

Details

Use .Call("VCF_clearFilters", vcffh ) to eliminate the overhead of using the R wrapper function.

Value

None.

Author(s)

Ulrich Wittelsbuerger

Examples

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	##
	##	Example:
	##
	vcffile <- vcf_open( system.file( "extdata" , "ex.vcf.gz" , package="WhopGenome" ) )
	vcf_setregion(vcffile, "Y", 1, 100000 )
	vcf_addfilter( vcffile, "POS", "", "INT_CMP_OO",
					as.integer(49005), as.integer(49007), "DROP" )
	vcf_describefilters( vcffile )
	####
	####
	vcf_readLineVecFiltered( vcffile )
	vcf_readLineVecFiltered( vcffile )
	vcf_readLineVecFiltered( vcffile )
	#######
	#######
	vcf_clearfilters( vcffile )
	vcf_describefilters( vcffile )
	vcf_restartregion( vcffile )
	####
	####
	vcf_readLineVecFiltered( vcffile )
	vcf_readLineVecFiltered( vcffile )
	vcf_readLineVecFiltered( vcffile )
	##
	##
	vcf_close( vcffile )

WhopGenome documentation built on May 1, 2019, 10:12 p.m.