vcf_open: Open the specified VCF file and return a filehandle for...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Open the specified VCF file and return a filehandle for subsequent access.
Usage
1
vcf_open(filename)
Arguments
filename
A filename of a tabix-indexed and gzip-compressed VCF file
Details
Use .Call("VCF_open", filename ) to eliminate the overhead of using the R wrapper function.
Value
A VCF file handle, used in most VCF functions
Author(s)
Ulrich Wittelsbuerger
Examples
1
vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
WhopGenome documentation built on May 1, 2019, 10:12 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Open the specified VCF file and return a filehandle for subsequent access.
Usage
1 | vcf_open(filename)
|
Arguments
filename |
A filename of a tabix-indexed and gzip-compressed VCF file |
Details
Use .Call("VCF_open", filename ) to eliminate the overhead of using the R wrapper function.
Value
A VCF file handle, used in most VCF functions
Author(s)
Ulrich Wittelsbuerger
Examples
1 | vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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