vcf_readLineDF: Read a line of data from the given VCF file and return it as...
In WhopGenome: High-Speed Processing of VCF, FASTA and Alignment Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Read a line of data from the given VCF file and return it as a data frame
Usage
1
vcf_readLineDF(vcffh)
Arguments
vcffh
VCF file handle
Details
Reads a line of data from the given VCF file, splits it up into its components (fields) and
fills a data.frame with the contents of the fields and names the entries according to the
header line of the VCF (e.g. CHROM, POS, ID, REF, ALT, ... ).
Value
A data frame
Author(s)
Ulrich Wittelsbuerger
Examples
1
2
vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
d <- vcf_readLineDF( vcffile )
WhopGenome documentation built on May 1, 2019, 10:12 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Read a line of data from the given VCF file and return it as a data frame
Usage
1 | vcf_readLineDF(vcffh)
|
Arguments
vcffh |
VCF file handle |
Details
Reads a line of data from the given VCF file, splits it up into its components (fields) and fills a data.frame with the contents of the fields and names the entries according to the header line of the VCF (e.g. CHROM, POS, ID, REF, ALT, ... ).
Value
A data frame
Author(s)
Ulrich Wittelsbuerger
Examples
1 2 | vcffile <- vcf_open( system.file( "extdata", "ex.vcf.gz" , package="WhopGenome") )
d <- vcf_readLineDF( vcffile )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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