bed2vcf: convert bed to vcf

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Description

convert bed to vcf

Usage

bed2vcf(x, filename = NULL, zero.based = TRUE, header = NULL, fasta = NULL)

Arguments

x	the input bed object
filename	a filename to write to.
zero.based	is the file zero based i.e. bed format. defaults to true.
header	a list of things to put in the header. repeated elements such as INFO, FILTER, FORMAT can be put in data.frames.
fasta	build of the genome in fasta format

Author(s)

Daryl Waggott

Examples

## Not run: 
  bed2vcf(x)
  
## End(Not run)

bedr documentation built on May 2, 2019, 11:36 a.m.