get.strand: get BEDPE ID from VCF ID
In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
get.strand R Documentation
get BEDPE ID from VCF ID
Description
Get strand informattion for each breakpoint from the VCF file (ALT or STRAND column).
Used in the 'vcf2bedpe' function.
Usage
get.strand(df)
Arguments
df
a dataframe object from a VCF file
Value
A column vector of strand information for each breakpoints
Author(s)
Helena Winata
Examples
## Not run:
name <- get.strand(x.vcf)
## End(Not run)
bedr documentation built on April 11, 2025, 5:52 p.m.
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| get.strand | R Documentation |
get BEDPE ID from VCF ID
Description
Get strand informattion for each breakpoint from the VCF file (ALT or STRAND column). Used in the 'vcf2bedpe' function.
Usage
get.strand(df)
Arguments
df |
a dataframe object from a VCF file |
Value
A column vector of strand information for each breakpoints
Author(s)
Helena Winata
Examples
## Not run:
name <- get.strand(x.vcf)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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