get.bedpe.id: get BEDPE ID from VCF ID

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

get BEDPE ID from VCF ID

Description

Get IDs for each breakpoint pair from the VCF file. Used in the 'vcf2bedpe' function.

Usage

get.bedpe.id(df)

Arguments

df	a dataframe object from a VCF file

Value

A column vector of names assigned to each Structural Variant in the BEDPE file

Author(s)

Helena Winata

Examples

## Not run: 
  name <- get.bedpe.id(x.vcf)
  
## End(Not run)

bedr documentation built on April 11, 2025, 5:52 p.m.