is.valid.region: checks if region/index is valid

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Description

checks if region/index is valid

Usage

is.valid.region(
	x,
	check.zero.based = TRUE,
	check.chr = TRUE,
	throw.error = FALSE,
	verbose = TRUE
	)

Arguments

x	The region index, bed file, or bed formatted object
check.zero.based	should basic test for zero based coordinates be checked
check.chr	should the algorithm check for the "chr" prefix
throw.error	should an error be thrown. The default is to report a logical vector of inconsistencies.
verbose	should diagnostic messages be printed

Author(s)

Daryl Waggott

Examples

index <- get.example.regions();

a <- index[[1]];
is.valid <- is.valid.region(a);
a.valid <- a[is.valid];

bedr documentation built on May 2, 2019, 11:36 a.m.