index2bed: convert a region index into a bed file dataframe

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Description

convert a region index into a bed file dataframe

Usage

index2bed(x, set.type = TRUE)

Arguments

x	an index
set.type	should the attribute input.type be set. Sometimes it is desirable to avoid setting it when applying intermediate conversion

Author(s)

Daryl Waggott

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();
a <- index[[1]];
a.bed <- index2bed(a);
}

bedr documentation built on May 2, 2019, 11:36 a.m.