is.merged.region: checks if region file is merged

In bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

checks if region file is merged

Description

checks if region file is merged

Usage

is.merged.region(
	x,
	check.zero.based = TRUE,
	check.chr = TRUE,
	check.valid = TRUE,
	check.sort = TRUE,
	verbose = FALSE
	)

Arguments

x	region or index
check.zero.based	should 0 based coordinates be checked
check.chr	should chr prefix be checked
check.valid	check if region is valid
check.sort	check if region is sorted
verbose	more words

Author(s)

Daryl Waggott

Examples

if (check.binary("bedtools")) {

index <- get.example.regions();

a <- index[[1]];

b <- is.merged.region(a);

}

bedr documentation built on April 11, 2025, 5:52 p.m.